Literature DB >> 18855461

Probing peptide nanotube self-assembly at a liquid-liquid interface with coarse-grained molecular dynamics.

Ekta Khurana1, Russell H DeVane, Axel Kohlmeyer, Michael L Klein.   

Abstract

Self-assembly at a liquid-liquid interface is a powerful experimental route to novel nanomaterials. We report herein a computational study of peptide nanotube formation at an oil-water interface. We probe interfacial self-assembly and nanotube formation of the cyclic octapeptide, cyclo [(-L-Trp-D-Leu-)4] as an illustrative example. Individual peptide rings are rapidly adsorbed at the liquid-liquid interface where they self-assemble. Monomeric and dimeric peptide rings lie with their molecular planes mostly parallel to the interface. Longer oligomeric nanotubes are increasingly tilted at the interface and grow by an Oswald ripening mechanism to eventually align their tube axis parallel to the interface. The present results on nanotube assembly suggest that computation will be a useful complement to experiment in understanding the nature of self-assembly of nanomaterials at liquid-liquid interfaces.

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Year:  2008        PMID: 18855461      PMCID: PMC2696305          DOI: 10.1021/nl801564m

Source DB:  PubMed          Journal:  Nano Lett        ISSN: 1530-6984            Impact factor:   11.189


  14 in total

1.  Self-assembled peptide nanotubes are uniquely rigid bioinspired supramolecular structures.

Authors:  Nitzan Kol; Lihi Adler-Abramovich; David Barlam; Roni Z Shneck; Ehud Gazit; Itay Rousso
Journal:  Nano Lett       Date:  2005-07       Impact factor: 11.189

2.  Interfacial rheology of an ultrathin nanocrystalline film formed at the liquid/liquid interface.

Authors:  Rema Krishnaswamy; Sayantan Majumdar; Rajesh Ganapathy; Ved Varun Agarwal; A K Sood; C N R Rao
Journal:  Langmuir       Date:  2007-02-15       Impact factor: 3.882

3.  Large-scale molecular dynamics simulations of self-assembling systems.

Authors:  Michael L Klein; Wataru Shinoda
Journal:  Science       Date:  2008-08-08       Impact factor: 47.728

4.  VMD: visual molecular dynamics.

Authors:  W Humphrey; A Dalke; K Schulten
Journal:  J Mol Graph       Date:  1996-02

5.  Use of the liquid-liquid interface for generating ultrathin nanocrystalline films of metals, chalcogenides, and oxides.

Authors:  C N R Rao; G U Kulkarni; Ved Varun Agrawal; Ujjal K Gautam; Moumita Ghosh; Usha Tumkurkar
Journal:  J Colloid Interface Sci       Date:  2005-09-15       Impact factor: 8.128

6.  Self-assembling organic nanotubes based on a cyclic peptide architecture.

Authors:  M R Ghadiri; J R Granja; R A Milligan; D E McRee; N Khazanovich
Journal:  Nature       Date:  1993-11-25       Impact factor: 49.962

7.  Self-assembling cyclic peptides: molecular dynamics studies of dimers in polar and nonpolar solvents.

Authors:  Ekta Khurana; Steven O Nielsen; Bernd Ensing; Michael L Klein
Journal:  J Phys Chem B       Date:  2006-09-28       Impact factor: 2.991

8.  Casting metal nanowires within discrete self-assembled peptide nanotubes.

Authors:  Meital Reches; Ehud Gazit
Journal:  Science       Date:  2003-04-25       Impact factor: 47.728

9.  Synthesis of inorganic nanomaterials.

Authors:  C N R Rao; S R C Vivekchand; Kanishka Biswas; A Govindaraj
Journal:  Dalton Trans       Date:  2007-08-06       Impact factor: 4.390

10.  Ultra-thin crystalline films of CdSe and CuSe formed at the organic-aqueous interface.

Authors:  K P Kalyanikutty; Ujjal K Gautam; C N R Rao
Journal:  J Nanosci Nanotechnol       Date:  2007-06
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  5 in total

1.  Molecular dynamics study of Na⁺ transportation in a cyclic peptide nanotube and its influences on water behaviors in the tube.

Authors:  Xuezeng Song; Jianfen Fan; Dongyan Liu; Hui Li; Rui Li
Journal:  J Mol Model       Date:  2013-07-31       Impact factor: 1.810

2.  Cyclo-hexa-peptides at the water/cyclohexane interface: a molecular dynamics simulation.

Authors:  Min Cen; Jian Fen Fan; Dong Yan Liu; Xue Zeng Song; Jian Liu; Wei Qun Zhou; He Ming Xiao
Journal:  J Mol Model       Date:  2012-09-16       Impact factor: 1.810

3.  A Transferable Coarse Grain Non-bonded Interaction Model For Amino Acids.

Authors:  Russell Devane; Wataru Shinoda; Preston B Moore; Michael L Klein
Journal:  J Chem Theory Comput       Date:  2009-08-11       Impact factor: 6.006

4.  Coarse-Grained Models for Protein-Cell Membrane Interactions.

Authors:  Ryan Bradley; Ravi Radhakrishnan
Journal:  Polymers (Basel)       Date:  2013       Impact factor: 4.329

5.  Silver(I)-directed growth of metal-organic complex nanocrystals with bidentate ligands of hydroquinine anthraquinone-1,4-diyl diethers as linkers at the water-chloroform interface.

Authors:  Ying Tang; Hui-Ting Wang; Meng Chen; Dong-Jin Qian; Li Zhang; Minghua Liu
Journal:  Nanoscale Res Lett       Date:  2014-09-12       Impact factor: 4.703

  5 in total

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