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Literature DB >> 15303826

Automated analysis of protein NMR assignments and structures.

Michael C Baran¹, Yuanpeng J Huang, Hunter N B Moseley, Gaetano T Montelione.

Abstract

Mesh：

Substances：
Proteins

Year: 2004 PMID： 15303826 DOI： 10.1021/cr030408p

Source DB: PubMed Journal: Chem Rev ISSN： 0009-2665 Impact factor: 60.622

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Cited

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42 in total

1. Iterative Development of an Application to Support Nuclear Magnetic Resonance Data Analysis of Proteins.

Authors: Heidi J C Ellis; Ronald J Nowling; Jay Vyas; Timothy O Martyn; Michael R Gryk
Journal: Proc Int Conf Inf Technol New Gener Date: 2011-04-11

Review 2. A community resource of experimental data for NMR / X-ray crystal structure pairs.

Authors: John K Everett; Roberto Tejero; Sarath B K Murthy; Thomas B Acton; James M Aramini; Michael C Baran; Jordi Benach; John R Cort; Alexander Eletsky; Farhad Forouhar; Rongjin Guan; Alexandre P Kuzin; Hsiau-Wei Lee; Gaohua Liu; Rajeswari Mani; Binchen Mao; Jeffrey L Mills; Alexander F Montelione; Kari Pederson; Robert Powers; Theresa Ramelot; Paolo Rossi; Jayaraman Seetharaman; David Snyder; G V T Swapna; Sergey M Vorobiev; Yibing Wu; Rong Xiao; Yunhuang Yang; Cheryl H Arrowsmith; John F Hunt; Michael A Kennedy; James H Prestegard; Thomas Szyperski; Liang Tong; Gaetano T Montelione
Journal: Protein Sci Date: 2015-09-22 Impact factor: 6.725

3. Automated projection spectroscopy (APSY).

Authors: Sebastian Hiller; Francesco Fiorito; Kurt Wüthrich; Gerhard Wider
Journal: Proc Natl Acad Sci U S A Date: 2005-07-25 Impact factor: 11.205

4. PASA--a program for automated protein NMR backbone signal assignment by pattern-filtering approach.

Authors: Yizhuang Xu; Xiaoxia Wang; Jun Yang; Julia Vaynberg; Jun Qin
Journal: J Biomol NMR Date: 2006-01 Impact factor: 2.835

5. Rapid measurement of 3J(H N-H alpha) and 3J(N-H beta) coupling constants in polypeptides.

Authors: Ravi Pratap Barnwal; Ashok K Rout; Kandala V R Chary; Hanudatta S Atreya
Journal: J Biomol NMR Date: 2007-10-04 Impact factor: 2.835

6. KUJIRA, a package of integrated modules for systematic and interactive analysis of NMR data directed to high-throughput NMR structure studies.

Authors: Naohiro Kobayashi; Junji Iwahara; Seizo Koshiba; Tadashi Tomizawa; Naoya Tochio; Peter Güntert; Takanori Kigawa; Shigeyuki Yokoyama
Journal: J Biomol NMR Date: 2007-07-18 Impact factor: 2.835

Automated analysis of protein NMR assignments and structures.

1. Iterative Development of an Application to Support Nuclear Magnetic Resonance Data Analysis of Proteins.

Review 2. A community resource of experimental data for NMR / X-ray crystal structure pairs.

3. Automated projection spectroscopy (APSY).

4. PASA--a program for automated protein NMR backbone signal assignment by pattern-filtering approach.

5. Rapid measurement of 3J(H N-H alpha) and 3J(N-H beta) coupling constants in polypeptides.

6. KUJIRA, a package of integrated modules for systematic and interactive analysis of NMR data directed to high-throughput NMR structure studies.

7. Automated assignment of NMR chemical shifts using peak-particle dynamics simulation with the DYNASSIGN algorithm.

8. Automated amino acid side-chain NMR assignment of proteins using (13)C- and (15)N-resolved 3D [ (1)H, (1)H]-NOESY.

9. Assignment-free solution NMR method reveals CesT as an unswapped homodimer.

10. Automated protein structure calculation from NMR data.