Literature DB >> 18685107

Single molecule force spectroscopy reveals engineered metal chelation is a general approach to enhance mechanical stability of proteins.

Yi Cao1, Teri Yoo, Hongbin Li.   

Abstract

Significant mechanical stability is an essential feature shared by many elastomeric proteins, which function as molecular springs in a wide variety of biological machinery and biomaterials of superb mechanical properties. Despite the progress in understanding molecular determinants of mechanical stability, it remains challenging to rationally enhance the mechanical stability of proteins. Using single molecule force spectroscopy and protein engineering techniques, we demonstrate that engineered bi-histidine metal chelation can enhance the mechanical stability of proteins significantly and reversibly. Based on simple thermodynamic cycle analysis, we engineered a bi-histidine metal chelation site into various locations of the small protein, GB1, to achieve preferential stabilization of the native state over the mechanical unfolding transition state of GB1 through the binding of metal ions. Our results demonstrate that the metal chelation can enhance the mechanical stability of GB1 by as much as 100 pN. Since bi-histidine metal chelation sites can be easily implemented, engineered metal chelation provides a general methodology to enhance the mechanical stability of a wide variety of proteins. This general approach in protein mechanics will enable the rational tuning of the mechanical stability of proteins. It will not only open new avenues toward engineering proteins of tailored nanomechanical properties, but also provide new approaches to systematically map the mechanical unfolding pathway of proteins.

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Year:  2008        PMID: 18685107      PMCID: PMC2516265          DOI: 10.1073/pnas.0803446105

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  37 in total

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Journal:  Trends Biotechnol       Date:  2001-04       Impact factor: 19.536

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Journal:  Nat Struct Biol       Date:  2000-05

Review 3.  Elastic proteins: biological roles and mechanical properties.

Authors:  John Gosline; Margo Lillie; Emily Carrington; Paul Guerette; Christine Ortlepp; Ken Savage
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2002-02-28       Impact factor: 6.237

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Authors:  S Nauli; B Kuhlman; D Baker
Journal:  Nat Struct Biol       Date:  2001-07

5.  Reverse engineering of the giant muscle protein titin.

Authors:  Hongbin Li; Wolfgang A Linke; Andres F Oberhauser; Mariano Carrion-Vazquez; Jason G Kerkvliet; Hui Lu; Piotr E Marszalek; Julio M Fernandez
Journal:  Nature       Date:  2002-08-29       Impact factor: 49.962

Review 6.  Ligand effects on protein thermodynamic stability.

Authors:  Jose M Sanchez-Ruiz
Journal:  Biophys Chem       Date:  2006-06-14       Impact factor: 2.352

7.  Designing an extracellular matrix protein with enhanced mechanical stability.

Authors:  Sean P Ng; Kate S Billings; Tomoo Ohashi; Mark D Allen; Robert B Best; Lucy G Randles; Harold P Erickson; Jane Clarke
Journal:  Proc Natl Acad Sci U S A       Date:  2007-05-29       Impact factor: 11.205

8.  A functional single-molecule binding assay via force spectroscopy.

Authors:  Yi Cao; M M Balamurali; Deepak Sharma; Hongbin Li
Journal:  Proc Natl Acad Sci U S A       Date:  2007-09-25       Impact factor: 11.205

9.  The molecular elasticity of the extracellular matrix protein tenascin.

Authors:  A F Oberhauser; P E Marszalek; H P Erickson; J M Fernandez
Journal:  Nature       Date:  1998-05-14       Impact factor: 49.962

Review 10.  Protein design: novel metal-binding sites.

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Journal:  Trends Biochem Sci       Date:  1995-07       Impact factor: 13.807

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  30 in total

1.  Dynamics of protein folding and cofactor binding monitored by single-molecule force spectroscopy.

Authors:  Yi Cao; Hongbin Li
Journal:  Biophys J       Date:  2011-10-19       Impact factor: 4.033

2.  Nanomechanics of the cadherin ectodomain: "canalization" by Ca2+ binding results in a new mechanical element.

Authors:  Javier Oroz; Alejandro Valbuena; Andrés Manuel Vera; Jesús Mendieta; Paulino Gómez-Puertas; Mariano Carrión-Vázquez
Journal:  J Biol Chem       Date:  2010-12-22       Impact factor: 5.157

3.  Engineering proteins with enhanced mechanical stability by force-specific sequence motifs.

Authors:  Wenzhe Lu; Surendra S Negi; Andres F Oberhauser; Werner Braun
Journal:  Proteins       Date:  2012-02-10

4.  Water's role in the force-induced unfolding of ubiquitin.

Authors:  Jingyuan Li; Julio M Fernandez; B J Berne
Journal:  Proc Natl Acad Sci U S A       Date:  2010-10-25       Impact factor: 11.205

5.  A theoretical model for the mechanical unfolding of repeat proteins.

Authors:  Dmitrii E Makarov
Journal:  Biophys J       Date:  2009-03-18       Impact factor: 4.033

6.  Force-driven separation of short double-stranded DNA.

Authors:  Dominik Ho; Julia L Zimmermann; Florian A Dehmelt; Uta Steinbach; Matthias Erdmann; Philip Severin; Katja Falter; Hermann E Gaub
Journal:  Biophys J       Date:  2009-12-16       Impact factor: 4.033

7.  Computational and single-molecule force studies of a macro domain protein reveal a key molecular determinant for mechanical stability.

Authors:  Dora L Guzmán; Arlo Randall; Pierre Baldi; Zhibin Guan
Journal:  Proc Natl Acad Sci U S A       Date:  2010-01-13       Impact factor: 11.205

8.  Inhibitor binding increases the mechanical stability of staphylococcal nuclease.

Authors:  Chien-Chung Wang; Tian-Yow Tsong; Yau-Heiu Hsu; Piotr E Marszalek
Journal:  Biophys J       Date:  2011-02-16       Impact factor: 4.033

9.  Enhancing the mechanical stability of proteins through a cocktail approach.

Authors:  Yi Cao; Yongnan Devin Li; Hongbin Li
Journal:  Biophys J       Date:  2011-04-06       Impact factor: 4.033

Review 10.  Discovery through the computational microscope.

Authors:  Eric H Lee; Jen Hsin; Marcos Sotomayor; Gemma Comellas; Klaus Schulten
Journal:  Structure       Date:  2009-10-14       Impact factor: 5.006

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