Literature DB >> 18676807

Transcription in the nucleus and mRNA decay in the cytoplasm are coupled processes.

Vicky Goler-Baron1, Michael Selitrennik, Oren Barkai, Gal Haimovich, Rona Lotan, Mordechai Choder.   

Abstract

Maintaining appropriate mRNAs levels is vital for any living cell. mRNA synthesis in the nucleus by RNA polymerase II core enzyme (Pol II) and mRNA decay by cytoplasmic machineries determine these levels. Yet, little is known about possible cross-talk between these processes. The yeast Rpb4/7 is a nucleo-cytoplasmic shuttling heterodimer that interacts with Pol II and with mRNAs and is required for mRNA decay in the cytoplasm. Here we show that interaction of Rpb4/7 with mRNAs and eventual decay of these mRNAs in the cytoplasm depends on association of Rpb4/7 with Pol II in the nucleus. We propose that, following its interaction with Pol II, Rpb4/7 functions in transcription, interacts with the transcript cotranscriptionally and travels with it to the cytoplasm to stimulate mRNA decay. Hence, by recruiting Rpb4/7, Pol II governs not only transcription but also mRNA decay.

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Year:  2008        PMID: 18676807      PMCID: PMC2492753          DOI: 10.1101/gad.473608

Source DB:  PubMed          Journal:  Genes Dev        ISSN: 0890-9369            Impact factor:   11.361


  29 in total

1.  Structure of an archaeal homolog of the eukaryotic RNA polymerase II RPB4/RPB7 complex.

Authors:  F Todone; P Brick; F Werner; R O Weinzierl; S Onesti
Journal:  Mol Cell       Date:  2001-11       Impact factor: 17.970

2.  Cytoplasmic degradation of splice-defective pre-mRNAs and intermediates.

Authors:  Patricia J Hilleren; Roy Parker
Journal:  Mol Cell       Date:  2003-12       Impact factor: 17.970

3.  Architecture of initiation-competent 12-subunit RNA polymerase II.

Authors:  Karim-Jean Armache; Hubert Kettenberger; Patrick Cramer
Journal:  Proc Natl Acad Sci U S A       Date:  2003-05-13       Impact factor: 11.205

4.  Complete, 12-subunit RNA polymerase II at 4.1-A resolution: implications for the initiation of transcription.

Authors:  David A Bushnell; Roger D Kornberg
Journal:  Proc Natl Acad Sci U S A       Date:  2003-05-13       Impact factor: 11.205

5.  Rpb4p, a subunit of RNA polymerase II, mediates mRNA export during stress.

Authors:  Marganit Farago; Tal Nahari; Christopher Hammel; Charles N Cole; Mordechai Choder
Journal:  Mol Biol Cell       Date:  2003-07       Impact factor: 4.138

6.  Structural and functional homology between the RNAP(I) subunits A14/A43 and the archaeal RNAP subunits E/F.

Authors:  Hedije Meka; Gregoire Daoust; Kristine Bourke Arnvig; Finn Werner; Peter Brick; Silvia Onesti
Journal:  Nucleic Acids Res       Date:  2003-08-01       Impact factor: 16.971

7.  Loss of the Rpb4/Rpb7 subcomplex in a mutant form of the Rpb6 subunit shared by RNA polymerases I, II, and III.

Authors:  Qian Tan; Meredith H Prysak; Nancy A Woychik
Journal:  Mol Cell Biol       Date:  2003-05       Impact factor: 4.272

Review 8.  Eukaryotic mRNA decapping.

Authors:  Jeff Coller; Roy Parker
Journal:  Annu Rev Biochem       Date:  2004       Impact factor: 23.643

9.  Zinc stoichiometry of yeast RNA polymerase II and characterization of mutations in the zinc-binding domain of the largest subunit.

Authors:  I M Donaldson; J D Friesen
Journal:  J Biol Chem       Date:  2000-05-05       Impact factor: 5.157

10.  Genomewide recruitment analysis of Rpb4, a subunit of polymerase II in Saccharomyces cerevisiae, reveals its involvement in transcription elongation.

Authors:  Jiyoti Verma-Gaur; Sudha Narayana Rao; Toshiki Taya; Parag Sadhale
Journal:  Eukaryot Cell       Date:  2008-04-25
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  52 in total

1.  Transcriptional priming of cytoplasmic post-transcriptional regulation.

Authors:  Itay Tirosh
Journal:  Transcription       Date:  2011-11-01

2.  The cytoplasmic fate of an mRNP is determined cotranscriptionally: exception or rule?

Authors:  Tatjana Trcek; Robert H Singer
Journal:  Genes Dev       Date:  2010-09-01       Impact factor: 11.361

3.  The conserved foot domain of RNA pol II associates with proteins involved in transcriptional initiation and/or early elongation.

Authors:  M Carmen García-López; Vicent Pelechano; M Carmen Mirón-García; Ana I Garrido-Godino; Alicia García; Olga Calvo; Michel Werner; José E Pérez-Ortín; Francisco Navarro
Journal:  Genetics       Date:  2011-09-27       Impact factor: 4.562

4.  Uncoupling of mRNA synthesis and degradation impairs adaptation to host temperature in Cryptococcus neoformans.

Authors:  Amanda L M Bloom; J T Graham Solomons; Virginia E Havel; John C Panepinto
Journal:  Mol Microbiol       Date:  2013-06-03       Impact factor: 3.501

5.  The transcription factor ERG recruits CCR4-NOT to control mRNA decay and mitotic progression.

Authors:  Xavier Rambout; Cécile Detiffe; Jonathan Bruyr; Emeline Mariavelle; Majid Cherkaoui; Sylvain Brohée; Pauline Demoitié; Marielle Lebrun; Romuald Soin; Bart Lesage; Katia Guedri; Monique Beullens; Mathieu Bollen; Thalia A Farazi; Richard Kettmann; Ingrid Struman; David E Hill; Marc Vidal; Véronique Kruys; Nicolas Simonis; Jean-Claude Twizere; Franck Dequiedt
Journal:  Nat Struct Mol Biol       Date:  2016-06-06       Impact factor: 15.369

6.  mRNA imprinting: Additional level in the regulation of gene expression.

Authors:  Mordechai Choder
Journal:  Cell Logist       Date:  2011-01

7.  Cotranscriptional assembly of mRNP complexes that determine the cytoplasmic fate of mRNA.

Authors:  Amélie Forget; Pascal Chartrand
Journal:  Transcription       Date:  2011-03

Review 8.  Multisubunit RNA polymerases IV and V: purveyors of non-coding RNA for plant gene silencing.

Authors:  Jeremy R Haag; Craig S Pikaard
Journal:  Nat Rev Mol Cell Biol       Date:  2011-07-22       Impact factor: 94.444

9.  mRNA levels are buffered upon knockdown of RNA decay and translation factors via adjustment of transcription rates in human HepG2 cells.

Authors:  Pavneet Singh; Rob S James; Christopher J Mee; Igor Y Morozov
Journal:  RNA Biol       Date:  2019-05-31       Impact factor: 4.652

10.  A novel link between Sus1 and the cytoplasmic mRNA decay machinery suggests a broad role in mRNA metabolism.

Authors:  Bernardo Cuenca-Bono; Varinia García-Molinero; Pau Pascual-García; Encar García-Oliver; Ana Llopis; Susana Rodríguez-Navarro
Journal:  BMC Cell Biol       Date:  2010-03-15       Impact factor: 4.241

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