Literature DB >> 18676368

Multiple ATP binding is required to stabilize the "activated" (clamp open) clamp loader of the T4 DNA replication complex.

Paola Pietroni1, Peter H von Hippel.   

Abstract

Most DNA replication systems include a sliding clamp that encircles the genomic DNA and links the polymerase to the template to control polymerase processivity. A loading complex is required to open the clamp and place it onto the DNA. In phage T4 this complex consists of a trimeric clamp of gp45 subunits and a pentameric loader assembly of four gp44 and one gp62 subunit(s), with clamp loading driven by ATP binding. We measure this binding as a function of input ligand concentration and show that four ATPs bind to the gp44/62 complex with equal affinity. In contrast, the ATPase rate profile of the clamp-clamp loader complex exhibits a marked peak at an input ATP concentration close to the overall Kd (approximately 30 microm), with further increases in bound ATP decreasing the ATPase rate to a much lower level. Thus the progressive binding of the four ATPs triggers a conformational change in the complex that markedly inhibits ATPase activity. This inhibition is related to ring opening by using a clamp that is covalently cross-linked across its subunit interfaces and thus rendered incapable of opening. Binding of this clamp abolishes substrate inhibition of the ATPase but leaves ATP binding unchanged. We show that four ATP ligands must bind to the T4 clamp loader before the loader can be fully "activated" and the clamp opened, and that ATP hydrolysis is required only for release of the loader complex after clamp loading onto the replication fork has been completed.

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Year:  2008        PMID: 18676368      PMCID: PMC2568904          DOI: 10.1074/jbc.M804371200

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  32 in total

1.  Crystal structure of the DNA polymerase processivity factor of T4 bacteriophage.

Authors:  I Moarefi; D Jeruzalmi; J Turner; M O'Donnell; J Kuriyan
Journal:  J Mol Biol       Date:  2000-03-10       Impact factor: 5.469

Review 2.  Sliding clamps: a (tail)ored fit.

Authors:  M M Hingorani; M O'Donnell
Journal:  Curr Biol       Date:  2000-01-13       Impact factor: 10.834

3.  Opening of a monomer-monomer interface of the trimeric bacteriophage T4-coded GP45 sliding clamp is required for clamp loading onto DNA.

Authors:  G J Latham; F Dong; P Pietroni; J M Dozono; D J Bacheller; P H von Hippel
Journal:  Proc Natl Acad Sci U S A       Date:  1999-10-26       Impact factor: 11.205

Review 4.  AAA+ superfamily ATPases: common structure--diverse function.

Authors:  T Ogura; A J Wilkinson
Journal:  Genes Cells       Date:  2001-07       Impact factor: 1.891

5.  ATP utilization by yeast replication factor C. II. Multiple stepwise ATP binding events are required to load proliferating cell nuclear antigen onto primed DNA.

Authors:  X V Gomes; S L Schmidt; P M Burgers
Journal:  J Biol Chem       Date:  2001-06-29       Impact factor: 5.157

6.  Mechanism of processivity clamp opening by the delta subunit wrench of the clamp loader complex of E. coli DNA polymerase III.

Authors:  D Jeruzalmi; O Yurieva; Y Zhao; M Young; J Stewart; M Hingorani; M O'Donnell; J Kuriyan
Journal:  Cell       Date:  2001-08-24       Impact factor: 41.582

7.  Crystal structure of the processivity clamp loader gamma (gamma) complex of E. coli DNA polymerase III.

Authors:  D Jeruzalmi; M O'Donnell; J Kuriyan
Journal:  Cell       Date:  2001-08-24       Impact factor: 41.582

8.  Dissection of the ATP-driven reaction cycle of the bacteriophage T4 DNA replication processivity clamp loading system.

Authors:  P Pietroni; M C Young; G J Latham; P H von Hippel
Journal:  J Mol Biol       Date:  2001-06-15       Impact factor: 5.469

9.  ATP utilization by yeast replication factor C. I. ATP-mediated interaction with DNA and with proliferating cell nuclear antigen.

Authors:  X V Gomes; P M Burgers
Journal:  J Biol Chem       Date:  2001-06-29       Impact factor: 5.157

Review 10.  Motors and switches: AAA+ machines within the replisome.

Authors:  Megan J Davey; David Jeruzalmi; John Kuriyan; Mike O'Donnell
Journal:  Nat Rev Mol Cell Biol       Date:  2002-11       Impact factor: 94.444

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  15 in total

Review 1.  Loading clamps for DNA replication and repair.

Authors:  Linda B Bloom
Journal:  DNA Repair (Amst)       Date:  2009-02-11

2.  Only one ATP-binding DnaX subunit is required for initiation complex formation by the Escherichia coli DNA polymerase III holoenzyme.

Authors:  Anna Wieczorek; Christopher D Downey; H Garry Dallmann; Charles S McHenry
Journal:  J Biol Chem       Date:  2010-07-30       Impact factor: 5.157

3.  Assembly and subunit stoichiometry of the functional helicase-primase (primosome) complex of bacteriophage T4.

Authors:  Davis Jose; Steven E Weitzel; Debra Jing; Peter H von Hippel
Journal:  Proc Natl Acad Sci U S A       Date:  2012-08-06       Impact factor: 11.205

4.  How a holoenzyme for DNA replication is formed.

Authors:  Senthil K Perumal; Wenhui Ren; Tae-Hee Lee; Stephen J Benkovic
Journal:  Proc Natl Acad Sci U S A       Date:  2012-12-17       Impact factor: 11.205

Review 5.  Replication clamps and clamp loaders.

Authors:  Mark Hedglin; Ravindra Kumar; Stephen J Benkovic
Journal:  Cold Spring Harb Perspect Biol       Date:  2013-04-01       Impact factor: 10.005

6.  ATP binding and hydrolysis-driven rate-determining events in the RFC-catalyzed PCNA clamp loading reaction.

Authors:  Miho Sakato; Yayan Zhou; Manju M Hingorani
Journal:  J Mol Biol       Date:  2011-12-13       Impact factor: 5.469

7.  Single-molecule FRET studies of the cooperative and non-cooperative binding kinetics of the bacteriophage T4 single-stranded DNA binding protein (gp32) to ssDNA lattices at replication fork junctions.

Authors:  Wonbae Lee; John P Gillies; Davis Jose; Brett A Israels; Peter H von Hippel; Andrew H Marcus
Journal:  Nucleic Acids Res       Date:  2016-09-30       Impact factor: 16.971

8.  Impact of individual proliferating cell nuclear antigen-DNA contacts on clamp loading and function on DNA.

Authors:  Yayan Zhou; Manju M Hingorani
Journal:  J Biol Chem       Date:  2012-08-17       Impact factor: 5.157

9.  Mechanism of ATP-driven PCNA clamp loading by S. cerevisiae RFC.

Authors:  Siying Chen; Mikhail K Levin; Miho Sakato; Yayan Zhou; Manju M Hingorani
Journal:  J Mol Biol       Date:  2009-03-13       Impact factor: 5.469

Review 10.  Processivity factor of DNA polymerase and its expanding role in normal and translesion DNA synthesis.

Authors:  Zhihao Zhuang; Yongxing Ai
Journal:  Biochim Biophys Acta       Date:  2009-07-01
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