Literature DB >> 18675353

Fluorescence characterization of denatured proteins.

Huimin Chen1, Elizabeth Rhoades.   

Abstract

Characterization of unfolded states, while critical to a complete understanding of protein folding, is inherently difficult due to structural heterogeneity and dynamic interchange between states. The growing body of work focusing on single molecule fluorescence techniques for the study of protein folding, also highlights their potential for studies of unfolded proteins. These methods can obtain conformational information about individual subpopulations of molecules in an ensemble, and measure dynamics without the need for synchronization. The studies highlighted here demonstrate the promise of these techniques for obtaining novel information about unfolded states in vitro and in more physiologically relevant milieu.

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Year:  2008        PMID: 18675353      PMCID: PMC2628948          DOI: 10.1016/j.sbi.2008.06.008

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  66 in total

1.  Characterizing the unfolded states of proteins using single-molecule FRET spectroscopy and molecular simulations.

Authors:  Kusai A Merchant; Robert B Best; John M Louis; Irina V Gopich; William A Eaton
Journal:  Proc Natl Acad Sci U S A       Date:  2007-01-24       Impact factor: 11.205

Review 2.  Atomic-level characterization of disordered protein ensembles.

Authors:  Tanja Mittag; Julie D Forman-Kay
Journal:  Curr Opin Struct Biol       Date:  2007-01-23       Impact factor: 6.809

3.  Shot-noise limited single-molecule FRET histograms: comparison between theory and experiments.

Authors:  Eyal Nir; Xavier Michalet; Kambiz M Hamadani; Ted A Laurence; Daniel Neuhauser; Yevgeniy Kovchegov; Shimon Weiss
Journal:  J Phys Chem B       Date:  2006-11-09       Impact factor: 2.991

4.  Dynamics of unfolded polypeptide chains in crowded environment studied by fluorescence correlation spectroscopy.

Authors:  Hannes Neuweiler; Marc Löllmann; Sören Doose; Markus Sauer
Journal:  J Mol Biol       Date:  2006-11-07       Impact factor: 5.469

5.  Ultrafast dynamics of protein collapse from single-molecule photon statistics.

Authors:  Daniel Nettels; Irina V Gopich; Armin Hoffmann; Benjamin Schuler
Journal:  Proc Natl Acad Sci U S A       Date:  2007-02-14       Impact factor: 11.205

6.  A natively unfolded yeast prion monomer adopts an ensemble of collapsed and rapidly fluctuating structures.

Authors:  Samrat Mukhopadhyay; Rajaraman Krishnan; Edward A Lemke; Susan Lindquist; Ashok A Deniz
Journal:  Proc Natl Acad Sci U S A       Date:  2007-02-13       Impact factor: 11.205

7.  Mapping protein collapse with single-molecule fluorescence and kinetic synchrotron radiation circular dichroism spectroscopy.

Authors:  Armin Hoffmann; Avinash Kane; Daniel Nettels; David E Hertzog; Peter Baumgärtel; Jan Lengefeld; Gerd Reichardt; David A Horsley; Robert Seckler; Olgica Bakajin; Benjamin Schuler
Journal:  Proc Natl Acad Sci U S A       Date:  2006-12-21       Impact factor: 11.205

8.  Improved structural characterizations of the drkN SH3 domain unfolded state suggest a compact ensemble with native-like and non-native structure.

Authors:  Joseph A Marsh; Chris Neale; Fernando E Jack; Wing-Yiu Choy; Anna Y Lee; Karin A Crowhurst; Julie D Forman-Kay
Journal:  J Mol Biol       Date:  2007-01-20       Impact factor: 5.469

9.  Fluorescence correlation spectroscopy shows that monomeric polyglutamine molecules form collapsed structures in aqueous solutions.

Authors:  Scott L Crick; Murali Jayaraman; Carl Frieden; Ronald Wetzel; Rohit V Pappu
Journal:  Proc Natl Acad Sci U S A       Date:  2006-10-30       Impact factor: 11.205

10.  Loop formation in unfolded polypeptide chains on the picoseconds to microseconds time scale.

Authors:  Beat Fierz; Helmut Satzger; Christopher Root; Peter Gilch; Wolfgang Zinth; Thomas Kiefhaber
Journal:  Proc Natl Acad Sci U S A       Date:  2007-02-06       Impact factor: 11.205

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  19 in total

1.  Single molecule characterization of α-synuclein in aggregation-prone states.

Authors:  Adam J Trexler; Elizabeth Rhoades
Journal:  Biophys J       Date:  2010-11-03       Impact factor: 4.033

2.  Measuring distances within unfolded biopolymers using fluorescence resonance energy transfer: The effect of polymer chain dynamics on the observed fluorescence resonance energy transfer efficiency.

Authors:  Dmitrii E Makarov; Kevin W Plaxco
Journal:  J Chem Phys       Date:  2009-08-28       Impact factor: 3.488

3.  Single-Molecule Analysis of Cytochrome c Folding by Monitoring the Lifetime of an Attached Fluorescent Probe.

Authors:  Andrea J Lee; Wesley B Asher; Harry A Stern; Kara L Bren; Todd D Krauss
Journal:  J Phys Chem Lett       Date:  2013-08-15       Impact factor: 6.475

4.  Beyond the random coil: stochastic conformational switching in intrinsically disordered proteins.

Authors:  Ucheor B Choi; James J McCann; Keith R Weninger; Mark E Bowen
Journal:  Structure       Date:  2011-04-13       Impact factor: 5.006

5.  Slow Interconversion in a Heterogeneous Unfolded-State Ensemble of Outer-Membrane Phospholipase A.

Authors:  Georg Krainer; Pablo Gracia; Erik Frotscher; Andreas Hartmann; Philip Gröger; Sandro Keller; Michael Schlierf
Journal:  Biophys J       Date:  2017-06-16       Impact factor: 4.033

Review 6.  Structural evaluations of tau protein conformation: methodologies and approaches.

Authors:  Nicole L Zabik; Matthew M Imhof; Sanela Martic-Milne
Journal:  Biochem Cell Biol       Date:  2017-03-09       Impact factor: 3.626

7.  Following Structural Changes by Thermal Denaturation Using Trapped Ion Mobility Spectrometry-Mass Spectrometry.

Authors:  Kevin Jeanne Dit Fouque; Francisco Fernandez-Lima
Journal:  J Phys Chem B       Date:  2020-07-14       Impact factor: 2.991

Review 8.  How, when and why proteins collapse: the relation to folding.

Authors:  Gilad Haran
Journal:  Curr Opin Struct Biol       Date:  2011-11-19       Impact factor: 6.809

9.  Immobilization of proteins for single-molecule fluorescence resonance energy transfer measurements of conformation and dynamics.

Authors:  Ucheor B Choi; Keith R Weninger; Mark E Bowen
Journal:  Methods Mol Biol       Date:  2012

Review 10.  A flash in the pan: dissecting dynamic amyloid intermediates using fluorescence.

Authors:  Abhinav Nath; Elizabeth Rhoades
Journal:  FEBS Lett       Date:  2013-03-01       Impact factor: 4.124

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