Literature DB >> 18673457

The bacterial replisome: back on track?

David Bates1.   

Abstract

Summary It has been postulated that bacterial DNA replication occurs via a factory mechanism in which unreplicated DNA is spooled into a centrally located replisome and newly synthesized DNA is discharged towards opposite cell poles. Although there is considerable support for this view, it does not fit with many key observations. I review new findings, and provide alternative interpretations for old findings, which challenge this model. As a whole, current data suggest that the replisome, at least in slowly growing Escherichia coli cells, tracks along a stationary chromosome. These replisomes are not stationary, tethered or restricted in their movement, but rather travel throughout the nucleoid. One possibility is that the replisome navigates along a chromosome made up of looped domains as has been previously envisioned.

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Year:  2008        PMID: 18673457      PMCID: PMC2972702          DOI: 10.1111/j.1365-2958.2008.06378.x

Source DB:  PubMed          Journal:  Mol Microbiol        ISSN: 0950-382X            Impact factor:   3.501


  49 in total

1.  Spatial and temporal organization of the Bacillus subtilis replication cycle.

Authors:  Melanie B Berkmen; Alan D Grossman
Journal:  Mol Microbiol       Date:  2006-08-30       Impact factor: 3.501

2.  Progressive segregation of the Escherichia coli chromosome.

Authors:  Henrik J Nielsen; Yongfang Li; Brenda Youngren; Flemming G Hansen; Stuart Austin
Journal:  Mol Microbiol       Date:  2006-06-12       Impact factor: 3.501

3.  The two Escherichia coli chromosome arms locate to separate cell halves.

Authors:  Xindan Wang; Xun Liu; Christophe Possoz; David J Sherratt
Journal:  Genes Dev       Date:  2006-07-01       Impact factor: 11.361

Review 4.  Replisome architecture and dynamics in Escherichia coli.

Authors:  Mike O'Donnell
Journal:  J Biol Chem       Date:  2006-01-18       Impact factor: 5.157

5.  Tracking of controlled Escherichia coli replication fork stalling and restart at repressor-bound DNA in vivo.

Authors:  Christophe Possoz; Sergio R Filipe; Ian Grainge; David J Sherratt
Journal:  EMBO J       Date:  2006-05-25       Impact factor: 11.598

6.  Dynamics of Escherichia coli chromosome segregation during multifork replication.

Authors:  Henrik J Nielsen; Brenda Youngren; Flemming G Hansen; Stuart Austin
Journal:  J Bacteriol       Date:  2007-09-28       Impact factor: 3.490

7.  Systematic localisation of proteins fused to the green fluorescent protein in Bacillus subtilis: identification of new proteins at the DNA replication factory.

Authors:  Jean-Christophe Meile; Ling Juan Wu; S Dusko Ehrlich; Jeff Errington; Philippe Noirot
Journal:  Proteomics       Date:  2006-04       Impact factor: 3.984

8.  SbcCD regulation and localization in Escherichia coli.

Authors:  Elise Darmon; Manuel A Lopez-Vernaza; Anne C Helness; Amanda Borking; Emily Wilson; Zubin Thacker; Laura Wardrope; David R F Leach
Journal:  J Bacteriol       Date:  2007-07-20       Impact factor: 3.490

9.  Live-cell imaging reveals replication of individual replicons in eukaryotic replication factories.

Authors:  Etsushi Kitamura; J Julian Blow; Tomoyuki U Tanaka
Journal:  Cell       Date:  2006-06-30       Impact factor: 41.582

10.  Independent positioning and action of Escherichia coli replisomes in live cells.

Authors:  Rodrigo Reyes-Lamothe; Christophe Possoz; Olessia Danilova; David J Sherratt
Journal:  Cell       Date:  2008-04-04       Impact factor: 41.582

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  11 in total

Review 1.  Synchronization of chromosome dynamics and cell division in bacteria.

Authors:  Martin Thanbichler
Journal:  Cold Spring Harb Perspect Biol       Date:  2010-01       Impact factor: 10.005

Review 2.  Studying genomic processes at the single-molecule level: introducing the tools and applications.

Authors:  David Dulin; Jan Lipfert; M Charl Moolman; Nynke H Dekker
Journal:  Nat Rev Genet       Date:  2012-10-30       Impact factor: 53.242

3.  Four-dimensional imaging of E. coli nucleoid organization and dynamics in living cells.

Authors:  Jay K Fisher; Aude Bourniquel; Guillaume Witz; Beth Weiner; Mara Prentiss; Nancy Kleckner
Journal:  Cell       Date:  2013-04-25       Impact factor: 41.582

Review 4.  The bacterial nucleoid: nature, dynamics and sister segregation.

Authors:  Nancy Kleckner; Jay K Fisher; Mathieu Stouf; Martin A White; David Bates; Guillaume Witz
Journal:  Curr Opin Microbiol       Date:  2014-12       Impact factor: 7.934

Review 5.  Entropy as the driver of chromosome segregation.

Authors:  Suckjoon Jun; Andrew Wright
Journal:  Nat Rev Microbiol       Date:  2010-08       Impact factor: 60.633

6.  The sub-cellular localization of Sulfolobus DNA replication.

Authors:  Tamzin Gristwood; Iain G Duggin; Michaela Wagner; Sonja V Albers; Stephen D Bell
Journal:  Nucleic Acids Res       Date:  2012-03-08       Impact factor: 16.971

7.  A model for Escherichia coli chromosome packaging supports transcription factor-induced DNA domain formation.

Authors:  Miriam Fritsche; Songling Li; Dieter W Heermann; Paul A Wiggins
Journal:  Nucleic Acids Res       Date:  2011-10-05       Impact factor: 16.971

8.  Recombinase and translesion DNA polymerase decrease the speed of replication fork progression during the DNA damage response in Escherichia coli cells.

Authors:  Kang Wei Tan; Tuan Minh Pham; Asako Furukohri; Hisaji Maki; Masahiro Tatsumi Akiyama
Journal:  Nucleic Acids Res       Date:  2015-01-27       Impact factor: 16.971

9.  Spatial and temporal organization of chromosome duplication and segregation in the cyanobacterium Synechococcus elongatus PCC 7942.

Authors:  Anna H Chen; Bruno Afonso; Pamela A Silver; David F Savage
Journal:  PLoS One       Date:  2012-10-24       Impact factor: 3.240

Review 10.  The why and how of DNA unlinking.

Authors:  Zhirong Liu; Richard W Deibler; Hue Sun Chan; Lynn Zechiedrich
Journal:  Nucleic Acids Res       Date:  2009-02       Impact factor: 16.971

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