Literature DB >> 18664577

The proton donor for O-O bond scission by cytochrome c oxidase.

Elena A Gorbikova1, Ilya Belevich, Mårten Wikström, Michael I Verkhovsky.   

Abstract

Cytochrome c oxidase is the main catalyst of oxygen consumption in mitochondria and many aerobic bacteria. The key step in oxygen reduction is scission of the O-O bond and formation of an intermediate P(R) of the binuclear active site composed of heme a(3) and Cu(B). The donor of the proton required for this reaction has been suggested to be a unique tyrosine residue (Tyr-280) covalently cross-linked to one of the histidine ligands of Cu(B). To test this idea we used the Glu-278-Gln mutant enzyme from Paracoccus denitrificans, in which the reaction with oxygen stops at the P(R) intermediate. Three different time-resolved techniques were used. Optical spectroscopy showed fast (approximately 60 micros) appearance of the P(R) species along with full oxidation of heme a, and FTIR spectroscopy revealed a band at 1,308 cm(-1), which is characteristic for the deprotonated form of the cross-linked Tyr-280. The development of electric potential during formation of the P(R) species suggests transfer of a proton over a distance of approximately 4 A perpendicular to the membrane plane, which is close to the distance between the oxygen atom of the hydroxyl group of Tyr-280 and the bound oxygen. These results strongly support the hypothesis that the cross-linked tyrosine is the proton donor for O-O bond cleavage by cytochrome c oxidase and strengthens the view that this tyrosine also provides the fourth electron in O(2) reduction in conditions where heme a is oxidized.

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Year:  2008        PMID: 18664577      PMCID: PMC2504829          DOI: 10.1073/pnas.0802512105

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  44 in total

1.  Charge translocation coupled to electron injection into oxidized cytochrome c oxidase from Paracoccus denitrificans.

Authors:  M I Verkhovsky; A Tuukkanen; C Backgren; A Puustinen; M Wikström
Journal:  Biochemistry       Date:  2001-06-19       Impact factor: 3.162

2.  Oxygen activation and reduction in respiration: involvement of redox-active tyrosine 244.

Authors:  D A Proshlyakov; M A Pressler; C DeMaso; J F Leykam; D L DeWitt; G T Babcock
Journal:  Science       Date:  2000-11-24       Impact factor: 47.728

3.  Uptake and release of protons during the reaction between cytochrome c oxidase and molecular oxygen: a flow-flash investigation.

Authors:  M Oliveberg; S Hallén; T Nilsson
Journal:  Biochemistry       Date:  1991-01-15       Impact factor: 3.162

4.  Mass spectrometric determination of dioxygen bond splitting in the "peroxy" intermediate of cytochrome c oxidase.

Authors:  M Fabian; W W Wong; R B Gennis; G Palmer
Journal:  Proc Natl Acad Sci U S A       Date:  1999-11-09       Impact factor: 11.205

5.  Role of the PR intermediate in the reaction of cytochrome c oxidase with O2.

Authors:  J E Morgan; M I Verkhovsky; G Palmer; M Wikström
Journal:  Biochemistry       Date:  2001-06-12       Impact factor: 3.162

6.  The reaction of fully reduced cytochrome c oxidase with oxygen studied by flow-flash spectrophotometry at room temperature. Evidence for new pathways of electron transfer.

Authors:  B C Hill; C Greenwood
Journal:  Biochem J       Date:  1984-03-15       Impact factor: 3.857

7.  Modeling the sequence of electron transfer reactions in the single turnover of reduced, mammalian cytochrome c oxidase with oxygen.

Authors:  B C Hill
Journal:  J Biol Chem       Date:  1994-01-28       Impact factor: 5.157

8.  Proton transfer during the reaction between fully reduced cytochrome c oxidase and dioxygen: pH and deuterium isotope effects.

Authors:  S Hallén; T Nilsson
Journal:  Biochemistry       Date:  1992-12-01       Impact factor: 3.162

Review 9.  Oxygen activation and the conservation of energy in cell respiration.

Authors:  G T Babcock; M Wikström
Journal:  Nature       Date:  1992-03-26       Impact factor: 49.962

10.  Charge transfer in the K proton pathway linked to electron transfer to the catalytic site in cytochrome c oxidase.

Authors:  Håkan Lepp; Emelie Svahn; Kristina Faxén; Peter Brzezinski
Journal:  Biochemistry       Date:  2008-04-05       Impact factor: 3.162

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  24 in total

1.  Initiation of the proton pump of cytochrome c oxidase.

Authors:  Ilya Belevich; Elena Gorbikova; Nikolai P Belevich; Virve Rauhamäki; Mårten Wikström; Michael I Verkhovsky
Journal:  Proc Natl Acad Sci U S A       Date:  2010-10-11       Impact factor: 11.205

2.  Snapshot of an oxygen intermediate in the catalytic reaction of cytochrome c oxidase.

Authors:  Izumi Ishigami; Ariel Lewis-Ballester; Austin Echelmeier; Gerrit Brehm; Nadia A Zatsepin; Thomas D Grant; Jesse D Coe; Stella Lisova; Garrett Nelson; Shangji Zhang; Zachary F Dobson; Sébastien Boutet; Raymond G Sierra; Alexander Batyuk; Petra Fromme; Raimund Fromme; John C H Spence; Alexandra Ros; Syun-Ru Yeh; Denis L Rousseau
Journal:  Proc Natl Acad Sci U S A       Date:  2019-02-11       Impact factor: 11.205

3.  A Water Dimer Shift Activates a Proton Pumping Pathway in the PR → F Transition of ba3 Cytochrome c Oxidase.

Authors:  Wen-Ge Han Du; Andreas W Götz; Louis Noodleman
Journal:  Inorg Chem       Date:  2018-01-08       Impact factor: 5.165

4.  Phenol-Induced O-O Bond Cleavage in a Low-Spin Heme-Peroxo-Copper Complex: Implications for O2 Reduction in Heme-Copper Oxidases.

Authors:  Andrew W Schaefer; Matthew T Kieber-Emmons; Suzanne M Adam; Kenneth D Karlin; Edward I Solomon
Journal:  J Am Chem Soc       Date:  2017-06-06       Impact factor: 15.419

5.  Functional role of Thr-312 and Thr-315 in the proton-transfer pathway in ba3 Cytochrome c oxidase from Thermus thermophilus.

Authors:  Irina Smirnova; Joachim Reimann; Christoph von Ballmoos; Hsin-Yang Chang; Robert B Gennis; James A Fee; Peter Brzezinski; Pia Adelroth
Journal:  Biochemistry       Date:  2010-08-24       Impact factor: 3.162

6.  DFT Fea3-O/O-O Vibrational Frequency Calculations over Catalytic Reaction Cycle States in the Dinuclear Center of Cytochrome c Oxidase.

Authors:  Wen-Ge Han Du; Andreas W Götz; Louis Noodleman
Journal:  Inorg Chem       Date:  2019-09-30       Impact factor: 5.165

7.  Spectral identification of intermediates generated during the reaction of dioxygen with the wild-type and EQ(I-286) mutant of Rhodobacter sphaeroides cytochrome c oxidase.

Authors:  Istvan Szundi; Chie Funatogawa; Jennifer Cassano; William McDonald; Jayashree Ray; Carrie Hiser; Shelagh Ferguson-Miller; Robert B Gennis; Ólöf Einarsdóttir
Journal:  Biochemistry       Date:  2012-11-06       Impact factor: 3.162

8.  B3LYP study on reduction mechanisms from O2 to H2O at the catalytic sites of fully reduced and mixed-valence bovine cytochrome c oxidases.

Authors:  Yasunori Yoshioka; Masaki Mitani
Journal:  Bioinorg Chem Appl       Date:  2010-04-06       Impact factor: 7.778

9.  A broken-symmetry density functional study of structures, energies, and protonation states along the catalytic O-O bond cleavage pathway in ba3 cytochrome c oxidase from Thermus thermophilus.

Authors:  Wen-Ge Han Du; Andreas W Götz; Longhua Yang; Ross C Walker; Louis Noodleman
Journal:  Phys Chem Chem Phys       Date:  2016-04-20       Impact factor: 3.676

10.  Multiscale simulations reveal key features of the proton-pumping mechanism in cytochrome c oxidase.

Authors:  Ruibin Liang; Jessica M J Swanson; Yuxing Peng; Mårten Wikström; Gregory A Voth
Journal:  Proc Natl Acad Sci U S A       Date:  2016-06-23       Impact factor: 11.205

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