Literature DB >> 28521498

Phenol-Induced O-O Bond Cleavage in a Low-Spin Heme-Peroxo-Copper Complex: Implications for O2 Reduction in Heme-Copper Oxidases.

Andrew W Schaefer1, Matthew T Kieber-Emmons1,2, Suzanne M Adam3, Kenneth D Karlin3, Edward I Solomon1.   

Abstract

This study evaluates the reaction of a biomimetic heme-peroxo-copper complex, {[(DCHIm)(F8)FeIII]-(O22-)-[CuII(AN)]}+ (1), with a phenolic substrate, involving a net H-atom abstraction to cleave the bridging peroxo O-O bond that produces FeIV═O, CuII-OH, and phenoxyl radical moieties, analogous to the chemistry carried out in heme-copper oxidases (HCOs). A 3D potential energy surface generated for this reaction reveals two possible reaction pathways: one involves nearly complete proton transfer (PT) from the phenol to the peroxo ligand before the barrier; the other involves O-O homolysis, where the phenol remains H-bonding to the peroxo OCu in the transition state (TS) and transfers the H+ after the barrier. In both mechanisms, electron transfer (ET) from phenol occurs after the PT (and after the barrier); therefore, only the interaction with the H+ is involved in lowering the O-O cleavage barrier. The relative barriers depend on covalency (which governs ET from Fe), and therefore vary with DFT functional. However, as these mechanisms differ by the amount of PT at the TS, kinetic isotope experiments were conducted to determine which mechanism is active. It is found that the phenolic proton exhibits a secondary kinetic isotope effect, consistent with the calculations for the H-bonded O-O homolysis mechanism. The consequences of these findings are discussed in relation to O-O cleavage in HCOs, supporting a model in which a peroxo intermediate serves as the active H+ acceptor, and both the H+ and e- required for O-O cleavage derive from the cross-linked Tyr residue present at the active site.

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Year:  2017        PMID: 28521498      PMCID: PMC5605297          DOI: 10.1021/jacs.7b03292

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  60 in total

1.  Structure, bonding, and relative stability of the ground and low-lying electronic states of CuO2. The role of exact exchange.

Authors:  Mireia Güell; Josep M Luis; Luís Rodríguez-Santiago; Mariona Sodupe; Miquel Solà
Journal:  J Phys Chem A       Date:  2009-02-19       Impact factor: 2.781

Review 2.  Copper active sites in biology.

Authors:  Edward I Solomon; David E Heppner; Esther M Johnston; Jake W Ginsbach; Jordi Cirera; Munzarin Qayyum; Matthew T Kieber-Emmons; Christian H Kjaergaard; Ryan G Hadt; Li Tian
Journal:  Chem Rev       Date:  2014-03-03       Impact factor: 60.622

Review 3.  Reaction mechanism of bovine heart cytochrome c oxidase.

Authors:  Shinya Yoshikawa; Kazumasa Muramoto; Kyoko Shinzawa-Itoh; Hiroshi Aoyama; Tomitake Tsukihara; Takashi Ogura; Kunitoshi Shimokata; Yukie Katayama; Hideo Shimada
Journal:  Biochim Biophys Acta       Date:  2006-05-19

4.  Direct detection of a dioxygen adduct of cytochrome a3 in the mixed valence cytochrome oxidase/dioxygen reaction.

Authors:  C Varotsis; W H Woodruff; G T Babcock
Journal:  J Biol Chem       Date:  1990-07-05       Impact factor: 5.157

5.  Critical Aspects of Heme-Peroxo-Cu Complex Structure and Nature of Proton Source Dictate Metal-O(peroxo) Breakage versus Reductive O-O Cleavage Chemistry.

Authors:  Suzanne M Adam; Isaac Garcia-Bosch; Andrew W Schaefer; Savita K Sharma; Maxime A Siegler; Edward I Solomon; Kenneth D Karlin
Journal:  J Am Chem Soc       Date:  2016-12-28       Impact factor: 15.419

6.  Kinetic resolution of a tryptophan-radical intermediate in the reaction cycle of Paracoccus denitrificans cytochrome c oxidase.

Authors:  Frank G M Wiertz; Oliver-Matthias H Richter; Bernd Ludwig; Simon de Vries
Journal:  J Biol Chem       Date:  2007-08-30       Impact factor: 5.157

7.  Factors determining electron-transfer rates in cytochrome c oxidase: investigation of the oxygen reaction in the R. sphaeroides enzyme.

Authors:  P Adelroth; M Ek; P Brzezinski
Journal:  Biochim Biophys Acta       Date:  1998-10-05

8.  Theoretical study on electronic structures of FeOO, FeOOH, FeO(H2O), and FeO in hemes: as intermediate models of dioxygen reduction in cytochrome c oxidase.

Authors:  Yasunori Yoshioka; Hiroyuki Satoh; Masaki Mitani
Journal:  J Inorg Biochem       Date:  2007-06-21       Impact factor: 4.155

9.  Dioxygen activation and bond cleavage by mixed-valence cytochrome c oxidase.

Authors:  D A Proshlyakov; M A Pressler; G T Babcock
Journal:  Proc Natl Acad Sci U S A       Date:  1998-07-07       Impact factor: 11.205

10.  A DFT Study of the Kinetic Isotope Effects on the Competing SN2 and E2 Reactions between Hypochlorite Anion and Ethyl Chloride.

Authors:  Anna Pabis; Piotr Paluch; Joanna Szala; Piotr Paneth
Journal:  J Chem Theory Comput       Date:  2009-01-13       Impact factor: 6.006

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  12 in total

1.  Geometric and Electronic Structure Contributions to O-O Cleavage and the Resultant Intermediate Generated in Heme-Copper Oxidases.

Authors:  Andrew W Schaefer; Antonio C Roveda; Anex Jose; Edward I Solomon
Journal:  J Am Chem Soc       Date:  2019-06-17       Impact factor: 15.419

2.  The three-spin intermediate at the O-O cleavage and proton-pumping junction in heme-Cu oxidases.

Authors:  Anex Jose; Andrew W Schaefer; Antonio C Roveda; Wesley J Transue; Sylvia K Choi; Ziqiao Ding; Robert B Gennis; Edward I Solomon
Journal:  Science       Date:  2021-09-09       Impact factor: 63.714

3.  Spin Interconversion of Heme-Peroxo-Copper Complexes Facilitated by Intramolecular Hydrogen-Bonding Interactions.

Authors:  Andrew W Schaefer; Melanie A Ehudin; David A Quist; Joel A Tang; Kenneth D Karlin; Edward I Solomon
Journal:  J Am Chem Soc       Date:  2019-03-14       Impact factor: 15.419

4.  NRVS Studies of the Peroxide Shunt Intermediate in a Rieske Dioxygenase and Its Relation to the Native FeII O2 Reaction.

Authors:  Kyle D Sutherlin; Brent S Rivard; Lars H Böttger; Lei V Liu; Melanie S Rogers; Martin Srnec; Kiyoung Park; Yoshitaka Yoda; Shinji Kitao; Yasuhiro Kobayashi; Makina Saito; Makoto Seto; Michael Hu; Jiyong Zhao; John D Lipscomb; Edward I Solomon
Journal:  J Am Chem Soc       Date:  2018-04-11       Impact factor: 15.419

Review 5.  Synthetic Fe/Cu Complexes: Toward Understanding Heme-Copper Oxidase Structure and Function.

Authors:  Suzanne M Adam; Gayan B Wijeratne; Patrick J Rogler; Daniel E Diaz; David A Quist; Jeffrey J Liu; Kenneth D Karlin
Journal:  Chem Rev       Date:  2018-10-29       Impact factor: 60.622

6.  A water-soluble supramolecular complex that mimics the heme/copper hetero-binuclear site of cytochrome c oxidase.

Authors:  Hiroaki Kitagishi; Daiki Shimoji; Takehiro Ohta; Ryo Kamiya; Yasuhiro Kudo; Akira Onoda; Takashi Hayashi; Jean Weiss; Jennifer A Wytko; Koji Kano
Journal:  Chem Sci       Date:  2018-01-15       Impact factor: 9.825

7.  A designed second-sphere hydrogen-bond interaction that critically influences the O-O bond activation for heterolytic cleavage in ferric iron-porphyrin complexes.

Authors:  Sarmistha Bhunia; Atanu Rana; Somdatta Ghosh Dey; Anabella Ivancich; Abhishek Dey
Journal:  Chem Sci       Date:  2020-01-27       Impact factor: 9.825

8.  Influence of intramolecular secondary sphere hydrogen-bonding interactions on cytochrome c oxidase inspired low-spin heme-peroxo-copper complexes.

Authors:  Melanie A Ehudin; Andrew W Schaefer; Suzanne M Adam; David A Quist; Daniel E Diaz; Joel A Tang; Edward I Solomon; Kenneth D Karlin
Journal:  Chem Sci       Date:  2019-01-04       Impact factor: 9.825

Review 9.  Oxygen Activation and Energy Conservation by Cytochrome c Oxidase.

Authors:  Mårten Wikström; Klaas Krab; Vivek Sharma
Journal:  Chem Rev       Date:  2018-01-19       Impact factor: 60.622

Review 10.  Molecular understanding of heteronuclear active sites in heme-copper oxidases, nitric oxide reductases, and sulfite reductases through biomimetic modelling.

Authors:  Christopher J Reed; Quan N Lam; Evan N Mirts; Yi Lu
Journal:  Chem Soc Rev       Date:  2021-03-01       Impact factor: 54.564

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