Literature DB >> 18654430

Recapturing and trapping single molecules with a solid-state nanopore.

Marc Gershow, J A Golovchenko.   

Abstract

The development of solid-state nanopores, inspired by their biological counterparts, shows great potential for the study of single macromolecules. Applications such as DNA sequencing and the exploration of protein folding require control of the dynamics of the molecule's interaction with the pore, but DNA capture by a solid-state nanopore is not well understood. By recapturing individual molecules soon after they pass through a nanopore, we reveal the mechanism by which double-stranded DNA enters the pore. The observed recapture rates and times agree with solutions of a drift-diffusion model. Electric forces draw DNA to the pore over micrometer-scale distances, and upon arrival at the pore, molecules begin translocation almost immediately. Repeated translocation of the same molecule improves measurement accuracy, offers a way to probe the chemical transformations and internal dynamics of macromolecules on sub-millisecond time and sub-micrometre length scales, and demonstrates the ability to trap, study and manipulate individual macromolecules in solution.

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Year:  2007        PMID: 18654430      PMCID: PMC3174059          DOI: 10.1038/nnano.2007.381

Source DB:  PubMed          Journal:  Nat Nanotechnol        ISSN: 1748-3387            Impact factor:   39.213


  24 in total

1.  Stochastic sensing of organic analytes by a pore-forming protein containing a molecular adapter.

Authors:  L Q Gu; O Braha; S Conlan; S Cheley; H Bayley
Journal:  Nature       Date:  1999-04-22       Impact factor: 49.962

2.  Ion-beam sculpting at nanometre length scales.

Authors:  J Li; D Stein; C McMullan; D Branton; M J Aziz; J A Golovchenko
Journal:  Nature       Date:  2001-07-12       Impact factor: 49.962

3.  Driven DNA transport into an asymmetric nanometer-scale pore.

Authors:  S E Henrickson; M Misakian; B Robertson; J J Kasianowicz
Journal:  Phys Rev Lett       Date:  2000-10-02       Impact factor: 9.161

4.  Detecting single stranded DNA with a solid state nanopore.

Authors:  Daniel Fologea; Marc Gershow; Bradley Ledden; David S McNabb; Jene A Golovchenko; Jiali Li
Journal:  Nano Lett       Date:  2005-10       Impact factor: 11.189

5.  Slowing DNA translocation in a solid-state nanopore.

Authors:  Daniel Fologea; James Uplinger; Brian Thomas; David S McNabb; Jiali Li
Journal:  Nano Lett       Date:  2005-09       Impact factor: 11.189

6.  Translocation of double-strand DNA through a silicon oxide nanopore.

Authors:  A J Storm; J H Chen; H W Zandbergen; C Dekker
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2005-05-06

Review 7.  Nanopore sequencing technology: research trends and applications.

Authors:  Minsoung Rhee; Mark A Burns
Journal:  Trends Biotechnol       Date:  2006-10-19       Impact factor: 19.536

Review 8.  Solid-state nanopores.

Authors:  Cees Dekker
Journal:  Nat Nanotechnol       Date:  2007-03-04       Impact factor: 39.213

9.  Electrical characterization of protein molecules by a solid-state nanopore.

Authors:  Daniel Fologea; Bradley Ledden; David S McNabb; Jiali Li
Journal:  Appl Phys Lett       Date:  2007-07-31       Impact factor: 3.791

10.  Characterization of individual polynucleotide molecules using a membrane channel.

Authors:  J J Kasianowicz; E Brandin; D Branton; D W Deamer
Journal:  Proc Natl Acad Sci U S A       Date:  1996-11-26       Impact factor: 11.205

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  65 in total

1.  Nanochannel-based single molecule recycling.

Authors:  John F Lesoine; Prahnesh A Venkataraman; Peter C Maloney; Mark E Dumont; Lukas Novotny
Journal:  Nano Lett       Date:  2012-06-04       Impact factor: 11.189

2.  Identifying single nucleotides by tunnelling current.

Authors:  Makusu Tsutsui; Masateru Taniguchi; Kazumichi Yokota; Tomoji Kawai
Journal:  Nat Nanotechnol       Date:  2010-03-21       Impact factor: 39.213

Review 3.  Artificial Molecular Machines.

Authors:  Sundus Erbas-Cakmak; David A Leigh; Charlie T McTernan; Alina L Nussbaumer
Journal:  Chem Rev       Date:  2015-09-08       Impact factor: 60.622

4.  Resistive-pulse measurements with nanopipettes: detection of Au nanoparticles and nanoparticle-bound anti-peanut IgY.

Authors:  Yixian Wang; Kaan Kececi; Michael V Mirkin; Vigneshwaran Mani; Naimish Sardesai; James F Rusling
Journal:  Chem Sci       Date:  2013-02-01       Impact factor: 9.825

5.  Toward the Responsible Development and Commercialization of Sensor Nanotechnologies.

Authors:  Tarek R Fadel; Dorothy F Farrell; Lisa E Friedersdorf; Mark H Griep; Mark D Hoover; Michael A Meador; M Meyyappan
Journal:  ACS Sens       Date:  2016-02-25       Impact factor: 7.711

6.  Enhanced translocation of single DNA molecules through alpha-hemolysin nanopores by manipulation of internal charge.

Authors:  Giovanni Maglia; Marcela Rincon Restrepo; Ellina Mikhailova; Hagan Bayley
Journal:  Proc Natl Acad Sci U S A       Date:  2008-12-05       Impact factor: 11.205

7.  A black body absorber from vertically aligned single-walled carbon nanotubes.

Authors:  Kohei Mizuno; Juntaro Ishii; Hideo Kishida; Yuhei Hayamizu; Satoshi Yasuda; Don N Futaba; Motoo Yumura; Kenji Hata
Journal:  Proc Natl Acad Sci U S A       Date:  2009-04-01       Impact factor: 11.205

8.  DNA Translocations through Nanopores under Nanoscale Preconfinement.

Authors:  Kyle Briggs; Gregory Madejski; Martin Magill; Konstantinos Kastritis; Hendrick W de Haan; James L McGrath; Vincent Tabard-Cossa
Journal:  Nano Lett       Date:  2017-12-06       Impact factor: 11.189

9.  Characterization of Virus Capsids and Their Assembly Intermediates by Multicycle Resistive-Pulse Sensing with Four Pores in Series.

Authors:  Jinsheng Zhou; Panagiotis Kondylis; Daniel G Haywood; Zachary D Harms; Lye Siang Lee; Adam Zlotnick; Stephen C Jacobson
Journal:  Anal Chem       Date:  2018-05-29       Impact factor: 6.986

Review 10.  Micro- and nanoscale devices for the investigation of epigenetics and chromatin dynamics.

Authors:  Carlos A Aguilar; Harold G Craighead
Journal:  Nat Nanotechnol       Date:  2013-10       Impact factor: 39.213

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