Literature DB >> 18651159

Population and segregation data on 17 Y-STRs: results of a GEP-ISFG collaborative study.

Paula Sánchez-Diz1, Cíntia Alves, Elizeu Carvalho, Mónica Carvalho, Rosa Espinheira, Oscar García, M Fátima Pinheiro, Lurdes Pontes, M João Porto, Oscar Santapa, Cláudia Silva, Denilce Sumita, Sérgio Valente, Martin Whittle, Iñaki Yurrebaso, Angel Carracedo, António Amorim, Leonor Gusmão.   

Abstract

A collaborative work was carried out by the Spanish and Portuguese International Society for Forensic Genetics Working Group in order to extend the existing data on Y-short tandem repeat (STR) mutations at the 17 Y chromosome STR loci included in the AmpFlSTR YFiler kit (Applied Biosystems): DYS19, DYS385, DYS389I, DYS389II, DYS390, DYS391, DYS392, DYS393, DYS437, DYS438, DYS439, DYS448, DYS456, DYS458, DYS635, and GATA H4.1. In a sample of 701 father/son pairs, 26 mutations were observed among 11,917 allele transfers across the 17 loci. After summing previously reported mutation data with our sample, mutation rates varied between 4.25 x 10(-4) (95% CI 0.05 x 10(-3)-1.53 x 10(-3)) at DYS438 and 6.36 x 10(-3) (95% CI 2.75 x 10(-3)-12.49 x 10(-3)) at DYS458. All mutations were single step, and mutations in the same father/son pair were found twice.

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Year:  2008        PMID: 18651159     DOI: 10.1007/s00414-008-0265-z

Source DB:  PubMed          Journal:  Int J Legal Med        ISSN: 0937-9827            Impact factor:   2.686


  26 in total

1.  Mutation rates at two human Y-chromosomal microsatellite loci using small pool PCR techniques.

Authors:  U Holtkemper; B Rolf; C Hohoff; P Forster; B Brinkmann
Journal:  Hum Mol Genet       Date:  2001-03-15       Impact factor: 6.150

2.  Mutations at Y-STR loci: implications for paternity testing and forensic analysis.

Authors:  M Kayser; A Sajantila
Journal:  Forensic Sci Int       Date:  2001-05-15       Impact factor: 2.395

3.  The effective mutation rate at Y chromosome short tandem repeats, with application to human population-divergence time.

Authors:  Lev A Zhivotovsky; Peter A Underhill; Cengiz Cinnioğlu; Manfred Kayser; Bharti Morar; Toomas Kivisild; Rosaria Scozzari; Fulvio Cruciani; Giovanni Destro-Bisol; Gabriella Spedini; Geoffrey K Chambers; Rene J Herrera; Kiau Kiun Yong; David Gresham; Ivailo Tournev; Marcus W Feldman; Luba Kalaydjieva
Journal:  Am J Hum Genet       Date:  2003-12-19       Impact factor: 11.025

4.  Development and validation of the AmpFlSTR Yfiler PCR amplification kit: a male specific, single amplification 17 Y-STR multiplex system.

Authors:  Julio J Mulero; Chien Wei Chang; Lisa M Calandro; Robert L Green; Yixin Li; Cassie L Johnson; Lori K Hennessy
Journal:  J Forensic Sci       Date:  2006-01       Impact factor: 1.832

5.  Y-chromosome genetic variation in Rio de Janeiro population.

Authors:  Dayse A Silva; Elizeu Carvalho; Guilherme Costa; Lígia Tavares; António Amorim; Leonor Gusmão
Journal:  Am J Hum Biol       Date:  2006 Nov-Dec       Impact factor: 1.937

6.  Twelve short tandem repeat loci Y chromosome haplotypes: genetic analysis on populations residing in North America.

Authors:  Bruce Budowle; Mike Adamowicz; Xavier G Aranda; Charles Barna; Ranajit Chakraborty; Dan Cheswick; Bradley Dafoe; Arthur Eisenberg; Roger Frappier; Ann Marie Gross; Carll Ladd; Hee-Suk Lee; Scott C Milne; Carole Meyers; Mechthild Prinz; Melanie L Richard; Gabriela Saldanha; Amy A Tierney; Lori Viculis; Benjamin E Krenke
Journal:  Forensic Sci Int       Date:  2005-05-28       Impact factor: 2.395

7.  Estimating Y chromosome specific microsatellite mutation frequencies using deep rooting pedigrees.

Authors:  E Heyer; J Puymirat; P Dieltjes; E Bakker; P de Knijff
Journal:  Hum Mol Genet       Date:  1997-05       Impact factor: 6.150

8.  Population data for Y-chromosome haplotypes defined by 17 STRs (AmpFlSTR YFiler) in Portugal.

Authors:  Cíntia Alves; Verónica Gomes; Maria João Prata; António Amorim; Leonor Gusmão
Journal:  Forensic Sci Int       Date:  2007-02-15       Impact factor: 2.395

9.  Haplotypes and mutation analysis of 22 Y-chromosomal STRs in Korean father-son pairs.

Authors:  Hwan Young Lee; Myung Jin Park; Ukhee Chung; Han Young Lee; Woo Ick Yang; Sang-Ho Cho; Kyoung-Jin Shin
Journal:  Int J Legal Med       Date:  2006-11-15       Impact factor: 2.686

10.  Mutation rates at Y chromosome specific microsatellites.

Authors:  L Gusmão; P Sánchez-Diz; F Calafell; P Martín; C A Alonso; F Alvarez-Fernández; C Alves; L Borjas-Fajardo; W R Bozzo; M L Bravo; J J Builes; J Capilla; M Carvalho; C Castillo; C I Catanesi; D Corach; A M Di Lonardo; R Espinheira; E Fagundes de Carvalho; M J Farfán; H P Figueiredo; I Gomes; M M Lojo; M Marino; M F Pinheiro; M L Pontes; V Prieto; E Ramos-Luis; J A Riancho; A C Souza Góes; O A Santapa; D R Sumita; G Vallejo; L Vidal Rioja; M C Vide; C I Vieira da Silva; M R Whittle; W Zabala; M T Zarrabeitia; A Alonso; A Carracedo; A Amorim
Journal:  Hum Mutat       Date:  2005-12       Impact factor: 4.878

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  12 in total

1.  Empirical evaluation reveals best fit of a logistic mutation model for human Y-chromosomal microsatellites.

Authors:  Arne Jochens; Amke Caliebe; Uwe Rösler; Michael Krawczak
Journal:  Genetics       Date:  2011-10-03       Impact factor: 4.562

2.  Bio-medicolegal guidelines and protocols: survey and future perspectives in Europe.

Authors:  Santo Davide Ferrara; Thomas Bajanowski; Rossana Cecchi; Rossella Snenghi; Colette Case; Guido Viel
Journal:  Int J Legal Med       Date:  2010-06-12       Impact factor: 2.686

3.  Population genetic analysis of haplotypes based on 17 short tandem repeat loci on Y chromosome in population sample from eastern Croatia.

Authors:  Branka Grsković; Gordan Mrsić; Andro Vrdoljak; Sinisa Merkas; Simun Andelinović
Journal:  Croat Med J       Date:  2010-06       Impact factor: 1.351

4.  Haplotype-assisted characterization of germline mutations at short tandem repeat loci.

Authors:  Miriam Müller; Ulla Sibbing; Carsten Hohoff; Bernd Brinkmann
Journal:  Int J Legal Med       Date:  2009-11-11       Impact factor: 2.686

5.  Parallel evolution of genes and languages in the Caucasus region.

Authors:  Oleg Balanovsky; Khadizhat Dibirova; Anna Dybo; Oleg Mudrak; Svetlana Frolova; Elvira Pocheshkhova; Marc Haber; Daniel Platt; Theodore Schurr; Wolfgang Haak; Marina Kuznetsova; Magomed Radzhabov; Olga Balaganskaya; Alexey Romanov; Tatiana Zakharova; David F Soria Hernanz; Pierre Zalloua; Sergey Koshel; Merritt Ruhlen; Colin Renfrew; R Spencer Wells; Chris Tyler-Smith; Elena Balanovska
Journal:  Mol Biol Evol       Date:  2011-05-13       Impact factor: 16.240

6.  Genetic differentiation between upland and lowland populations shapes the Y-chromosomal landscape of West Asia.

Authors:  O Balanovsky; M Chukhryaeva; V Zaporozhchenko; V Urasin; M Zhabagin; A Hovhannisyan; A Agdzhoyan; K Dibirova; M Kuznetsova; S Koshel; E Pocheshkhova; I Alborova; R Skhalyakho; O Utevska; Kh Mustafin; L Yepiskoposyan; C Tyler-Smith; E Balanovska
Journal:  Hum Genet       Date:  2017-03-09       Impact factor: 4.132

7.  Comprehensive mutation analysis of 17 Y-chromosomal short tandem repeat polymorphisms included in the AmpFlSTR Yfiler PCR amplification kit.

Authors:  Miriam Goedbloed; Mark Vermeulen; Rixun N Fang; Maria Lembring; Andreas Wollstein; Kaye Ballantyne; Oscar Lao; Silke Brauer; Carmen Krüger; Lutz Roewer; Rüdiger Lessig; Rafal Ploski; Tadeusz Dobosz; Lotte Henke; Jürgen Henke; Manohar R Furtado; Manfred Kayser
Journal:  Int J Legal Med       Date:  2009-03-26       Impact factor: 2.686

8.  Analysis of paternal lineages in Brazilian and African populations.

Authors:  Mónica Carvalho; Pedro Brito; Virgínia Lopes; Lisa Andrade; M João Anjos; Francisco Corte Real; Leonor Gusmão
Journal:  Genet Mol Biol       Date:  2010-09-01       Impact factor: 1.771

9.  Deep phylogenetic analysis of haplogroup G1 provides estimates of SNP and STR mutation rates on the human Y-chromosome and reveals migrations of Iranic speakers.

Authors:  Oleg Balanovsky; Maxat Zhabagin; Anastasiya Agdzhoyan; Marina Chukhryaeva; Valery Zaporozhchenko; Olga Utevska; Gareth Highnam; Zhaxylyk Sabitov; Elliott Greenspan; Khadizhat Dibirova; Roza Skhalyakho; Marina Kuznetsova; Sergey Koshel; Yuldash Yusupov; Pagbajabyn Nymadawa; Zhaxybay Zhumadilov; Elvira Pocheshkhova; Marc Haber; Pierre A Zalloua; Levon Yepiskoposyan; Anna Dybo; Chris Tyler-Smith; Elena Balanovska
Journal:  PLoS One       Date:  2015-04-07       Impact factor: 3.240

10.  Dissecting the influence of Neolithic demic diffusion on Indian Y-chromosome pool through J2-M172 haplogroup.

Authors:  Sakshi Singh; Ashish Singh; Raja Rajkumar; Katakam Sampath Kumar; Subburaj Kadarkarai Samy; Sheikh Nizamuddin; Amita Singh; Shahnawaz Ahmed Sheikh; Vidya Peddada; Vinee Khanna; Pandichelvam Veeraiah; Aridaman Pandit; Gyaneshwer Chaubey; Lalji Singh; Kumarasamy Thangaraj
Journal:  Sci Rep       Date:  2016-01-12       Impact factor: 4.379

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