Literature DB >> 17106736

Haplotypes and mutation analysis of 22 Y-chromosomal STRs in Korean father-son pairs.

Hwan Young Lee1, Myung Jin Park, Ukhee Chung, Han Young Lee, Woo Ick Yang, Sang-Ho Cho, Kyoung-Jin Shin.   

Abstract

We analyzed 369 Korean father/son haplotype transfers in 355 families at 22 Y-STRs (DYS19, DYS389I/II, DYS390, DYS391, DYS392, DYS393, DYS385, DYS388, DYS437, DYS438, DYS439, DYS446, DYS447, DYS448, DYS449, DYS456, DYS458, DYS464, DYS635, and GATA H4.1). A total of 350 haplotypes were observed with an overall haplotype diversity of 0.9999. Among these, 345 were unique and five were found twice. Furthermore, 36 mutations were identified, giving locus-specific mutation rate estimates between 0.0 and 19.0 x 10(-3) per generation and an average mutation rate estimate of 3.9 x 10(-3) (95% CI 2.7-5.4 x 10(-3)). The compilation of Y-STR mutation events for the present study and previous studies demonstrates that DYS449, DYS458, DYS635, DYS456 and DYS439 are the most prone to mutations and that their overall average mutation rate estimate is 2.36 x 10(-3) (95% CI 2.03-2.73 x 10(-33)).

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Year:  2006        PMID: 17106736     DOI: 10.1007/s00414-006-0130-x

Source DB:  PubMed          Journal:  Int J Legal Med        ISSN: 0937-9827            Impact factor:   2.686


  26 in total

1.  Characteristics and frequency of germline mutations at microsatellite loci from the human Y chromosome, as revealed by direct observation in father/son pairs.

Authors:  M Kayser; L Roewer; M Hedman; L Henke; J Henke; S Brauer; C Krüger; M Krawczak; M Nagy; T Dobosz; R Szibor; P de Knijff; M Stoneking; A Sajantila
Journal:  Am J Hum Genet       Date:  2000-04-06       Impact factor: 11.025

2.  Mutations at Y-STR loci: implications for paternity testing and forensic analysis.

Authors:  M Kayser; A Sajantila
Journal:  Forensic Sci Int       Date:  2001-05-15       Impact factor: 2.395

3.  Evaluation of Y-chromosomal STRs: a multicenter study.

Authors:  M Kayser; A Caglià; D Corach; N Fretwell; C Gehrig; G Graziosi; F Heidorn; S Herrmann; B Herzog; M Hidding; K Honda; M Jobling; M Krawczak; K Leim; S Meuser; E Meyer; W Oesterreich; A Pandya; W Parson; G Penacino; A Perez-Lezaun; A Piccinini; M Prinz; C Schmitt; L Roewer
Journal:  Int J Legal Med       Date:  1997       Impact factor: 2.686

4.  Genetic relationships of Asians and Northern Europeans, revealed by Y-chromosomal DNA analysis.

Authors:  T Zerjal; B Dashnyam; A Pandya; M Kayser; L Roewer; F R Santos; W Schiefenhövel; N Fretwell; M A Jobling; S Harihara; K Shimizu; D Semjidmaa; A Sajantila; P Salo; M H Crawford; E K Ginter; O V Evgrafov; C Tyler-Smith
Journal:  Am J Hum Genet       Date:  1997-05       Impact factor: 11.025

5.  Twelve short tandem repeat loci Y chromosome haplotypes: genetic analysis on populations residing in North America.

Authors:  Bruce Budowle; Mike Adamowicz; Xavier G Aranda; Charles Barna; Ranajit Chakraborty; Dan Cheswick; Bradley Dafoe; Arthur Eisenberg; Roger Frappier; Ann Marie Gross; Carll Ladd; Hee-Suk Lee; Scott C Milne; Carole Meyers; Mechthild Prinz; Melanie L Richard; Gabriela Saldanha; Amy A Tierney; Lori Viculis; Benjamin E Krenke
Journal:  Forensic Sci Int       Date:  2005-05-28       Impact factor: 2.395

6.  Mutation of human short tandem repeats.

Authors:  J L Weber; C Wong
Journal:  Hum Mol Genet       Date:  1993-08       Impact factor: 6.150

7.  Y-STR typing of an Austrian population sample using a 17-loci multiplex PCR assay.

Authors:  Burkhard Berger; Alexandra Lindinger; Harald Niederstätter; Petra Grubwieser; Walther Parson
Journal:  Int J Legal Med       Date:  2005-04-21       Impact factor: 2.686

8.  Estimating Y chromosome specific microsatellite mutation frequencies using deep rooting pedigrees.

Authors:  E Heyer; J Puymirat; P Dieltjes; E Bakker; P de Knijff
Journal:  Hum Mol Genet       Date:  1997-05       Impact factor: 6.150

9.  Population and mutation analysis of 17 Y-STR loci from Rio de Janeiro (Brazil).

Authors:  Andréa Carla de Souza Góes; Elizeu Fagundes de Carvalho; Iva Gomes; Dayse Aparecida da Silva; Erica Helena Fonseca Gil; António Amorim; Leonor Gusmão
Journal:  Int J Legal Med       Date:  2004-11-24       Impact factor: 2.686

10.  Mutation rates at Y chromosome specific microsatellites.

Authors:  L Gusmão; P Sánchez-Diz; F Calafell; P Martín; C A Alonso; F Alvarez-Fernández; C Alves; L Borjas-Fajardo; W R Bozzo; M L Bravo; J J Builes; J Capilla; M Carvalho; C Castillo; C I Catanesi; D Corach; A M Di Lonardo; R Espinheira; E Fagundes de Carvalho; M J Farfán; H P Figueiredo; I Gomes; M M Lojo; M Marino; M F Pinheiro; M L Pontes; V Prieto; E Ramos-Luis; J A Riancho; A C Souza Góes; O A Santapa; D R Sumita; G Vallejo; L Vidal Rioja; M C Vide; C I Vieira da Silva; M R Whittle; W Zabala; M T Zarrabeitia; A Alonso; A Carracedo; A Amorim
Journal:  Hum Mutat       Date:  2005-12       Impact factor: 4.878

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  14 in total

1.  Empirical evaluation reveals best fit of a logistic mutation model for human Y-chromosomal microsatellites.

Authors:  Arne Jochens; Amke Caliebe; Uwe Rösler; Michael Krawczak
Journal:  Genetics       Date:  2011-10-03       Impact factor: 4.562

2.  Investigations of the Y chromosome, male founder structure and YSTR mutation rates in the Old Order Amish.

Authors:  Toni I Pollin; Daniel J McBride; Richa Agarwala; Alejandro A Schäffer; Alan R Shuldiner; Braxton D Mitchell; Jeffrey R O'Connell
Journal:  Hum Hered       Date:  2007-09-26       Impact factor: 0.444

3.  Allele frequency distribution of 13 X-chromosomal STR loci in Pakistani population.

Authors:  Muhammad Akram Tariq; Obaid Ullah; S Amer Riazuddin; Sheikh Riazuddin
Journal:  Int J Legal Med       Date:  2008-07-16       Impact factor: 2.686

4.  Reduced-volume and low-volume typing of Y-chromosomal SNPs to obtain Finnish Y-chromosomal compound haplotypes.

Authors:  Marielle Heinrich; Tina Braun; Timo Sänger; Pekka Saukko; Sabine Lutz-Bonengel; Ulrike Schmidt
Journal:  Int J Legal Med       Date:  2009-08-28       Impact factor: 2.686

5.  Haplotype-assisted characterization of germline mutations at short tandem repeat loci.

Authors:  Miriam Müller; Ulla Sibbing; Carsten Hohoff; Bernd Brinkmann
Journal:  Int J Legal Med       Date:  2009-11-11       Impact factor: 2.686

6.  Genetic polymorphism investigation of the Chinese Yi minority using PowerPlex® Y23 STR amplification system.

Authors:  GuangLin He; PengYu Chen; Xing Zou; Xu Chen; Feng Song; Jing Yan; YiPing Hou
Journal:  Int J Legal Med       Date:  2017-01-16       Impact factor: 2.686

7.  Comprehensive mutation analysis of 17 Y-chromosomal short tandem repeat polymorphisms included in the AmpFlSTR Yfiler PCR amplification kit.

Authors:  Miriam Goedbloed; Mark Vermeulen; Rixun N Fang; Maria Lembring; Andreas Wollstein; Kaye Ballantyne; Oscar Lao; Silke Brauer; Carmen Krüger; Lutz Roewer; Rüdiger Lessig; Rafal Ploski; Tadeusz Dobosz; Lotte Henke; Jürgen Henke; Manohar R Furtado; Manfred Kayser
Journal:  Int J Legal Med       Date:  2009-03-26       Impact factor: 2.686

8.  The rate and spectrum of microsatellite mutation in Caenorhabditis elegans and Daphnia pulex.

Authors:  Amanda L Seyfert; Melania E A Cristescu; Linda Frisse; Sarah Schaack; W Kelley Thomas; Michael Lynch
Journal:  Genetics       Date:  2008-04       Impact factor: 4.562

9.  Population and segregation data on 17 Y-STRs: results of a GEP-ISFG collaborative study.

Authors:  Paula Sánchez-Diz; Cíntia Alves; Elizeu Carvalho; Mónica Carvalho; Rosa Espinheira; Oscar García; M Fátima Pinheiro; Lurdes Pontes; M João Porto; Oscar Santapa; Cláudia Silva; Denilce Sumita; Sérgio Valente; Martin Whittle; Iñaki Yurrebaso; Angel Carracedo; António Amorim; Leonor Gusmão
Journal:  Int J Legal Med       Date:  2008-07-24       Impact factor: 2.686

10.  A worldwide survey of human male demographic history based on Y-SNP and Y-STR data from the HGDP-CEPH populations.

Authors:  Wentao Shi; Qasim Ayub; Mark Vermeulen; Rong-guang Shao; Sofia Zuniga; Kristiaan van der Gaag; Peter de Knijff; Manfred Kayser; Yali Xue; Chris Tyler-Smith
Journal:  Mol Biol Evol       Date:  2009-10-12       Impact factor: 16.240

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