Literature DB >> 18650940

Cryo-electron microscopy reveals a novel DNA-binding site on the MCM helicase.

Alessandro Costa1, Gijs van Duinen, Barbara Medagli, James Chong, Nozomi Sakakibara, Zvi Kelman, Satish K Nair, Ardan Patwardhan, Silvia Onesti.   

Abstract

The eukaryotic MCM2-7 complex is recruited at origins of replication during the G1 phase and acts as the main helicase at the replication fork during the S phase of the cell cycle. To characterize the interplay between the MCM helicase and DNA prior to the melting of the double helix, we determined the structure of an archaeal MCM orthologue bound to a 5.6-kb double-stranded DNA segment, using cryo-electron microscopy. DNA wraps around the N-terminal face of a single hexameric ring. This interaction requires a conformational change within the outer belt of the MCM N-terminal domain, exposing a previously unrecognized helix-turn-helix DNA-binding motif. Our findings provide novel insights into the role of the MCM complex during the initiation step of DNA replication.

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Year:  2008        PMID: 18650940      PMCID: PMC2519097          DOI: 10.1038/emboj.2008.135

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  57 in total

1.  EMAN: semiautomated software for high-resolution single-particle reconstructions.

Authors:  S J Ludtke; P R Baldwin; W Chiu
Journal:  J Struct Biol       Date:  1999-12-01       Impact factor: 2.867

2.  Biochemical characterization of the Methanothermobacter thermautotrophicus minichromosome maintenance (MCM) helicase N-terminal domains.

Authors:  Rajesh Kasiviswanathan; Jae-Ho Shin; Eugene Melamud; Zvi Kelman
Journal:  J Biol Chem       Date:  2004-04-20       Impact factor: 5.157

3.  Polymorphism and double hexamer structure in the archaeal minichromosome maintenance (MCM) helicase from Methanobacterium thermoautotrophicum.

Authors:  Yacob Gómez-Llorente; Ryan J Fletcher; Xiaojiang S Chen; José M Carazo; Carmen San Martín
Journal:  J Biol Chem       Date:  2005-10-11       Impact factor: 5.157

4.  Isolation of the Cdc45/Mcm2-7/GINS (CMG) complex, a candidate for the eukaryotic DNA replication fork helicase.

Authors:  Stephen E Moyer; Peter W Lewis; Michael R Botchan
Journal:  Proc Natl Acad Sci U S A       Date:  2006-06-23       Impact factor: 11.205

5.  The single minichromosome maintenance protein of Methanobacterium thermoautotrophicum DeltaH contains DNA helicase activity.

Authors:  Z Kelman; J K Lee; J Hurwitz
Journal:  Proc Natl Acad Sci U S A       Date:  1999-12-21       Impact factor: 11.205

6.  Premature structural changes at replication origins in a yeast minichromosome maintenance (MCM) mutant.

Authors:  D S Geraghty; M Ding; N H Heintz; D S Pederson
Journal:  J Biol Chem       Date:  2000-06-16       Impact factor: 5.157

7.  Structural changes in Mcm5 protein bypass Cdc7-Dbf4 function and reduce replication origin efficiency in Saccharomyces cerevisiae.

Authors:  Margaret L Hoang; Ronald P Leon; Luis Pessoa-Brandao; Sonia Hunt; M K Raghuraman; Walton L Fangman; Bonita J Brewer; Robert A Sclafani
Journal:  Mol Cell Biol       Date:  2007-08-27       Impact factor: 4.272

8.  The structure and function of MCM from archaeal M. Thermoautotrophicum.

Authors:  Ryan J Fletcher; Brooke E Bishop; Ronald P Leon; Robert A Sclafani; Craig M Ogata; Xiaojiang S Chen
Journal:  Nat Struct Biol       Date:  2003-03

9.  Archaeal MCM has separable processivity, substrate choice and helicase domains.

Authors:  Elizabeth R Barry; Adam T McGeoch; Zvi Kelman; Stephen D Bell
Journal:  Nucleic Acids Res       Date:  2007-01-26       Impact factor: 16.971

10.  Structural analysis of the Sulfolobus solfataricus MCM protein N-terminal domain.

Authors:  Wei Liu; Biagio Pucci; Mosè Rossi; Francesca M Pisani; Rudolf Ladenstein
Journal:  Nucleic Acids Res       Date:  2008-04-16       Impact factor: 16.971

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  21 in total

1.  Mutational analysis of conserved aspartic acid residues in the Methanothermobacter thermautotrophicus MCM helicase.

Authors:  Nozomi Sakakibara; Rajesh Kasiviswanathan; Zvi Kelman
Journal:  Extremophiles       Date:  2011-01-28       Impact factor: 2.395

Review 2.  The Mcm complex: unwinding the mechanism of a replicative helicase.

Authors:  Matthew L Bochman; Anthony Schwacha
Journal:  Microbiol Mol Biol Rev       Date:  2009-12       Impact factor: 11.056

Review 3.  Mechanisms and regulation of DNA replication initiation in eukaryotes.

Authors:  Matthew W Parker; Michael R Botchan; James M Berger
Journal:  Crit Rev Biochem Mol Biol       Date:  2017-01-17       Impact factor: 8.250

4.  Cdc45 (cell division cycle protein 45) guards the gate of the Eukaryote Replisome helicase stabilizing leading strand engagement.

Authors:  Tatjana Petojevic; James J Pesavento; Alessandro Costa; Jingdan Liang; Zhijun Wang; James M Berger; Michael R Botchan
Journal:  Proc Natl Acad Sci U S A       Date:  2015-01-05       Impact factor: 11.205

Review 5.  Structure and evolutionary origins of the CMG complex.

Authors:  Silvia Onesti; Stuart A MacNeill
Journal:  Chromosoma       Date:  2013-02-15       Impact factor: 4.316

Review 6.  Unwinding 20 Years of the Archaeal Minichromosome Maintenance Helicase.

Authors:  Lori M Kelman; William B O'Dell; Zvi Kelman
Journal:  J Bacteriol       Date:  2020-02-25       Impact factor: 3.490

Review 7.  Mechanisms for initiating cellular DNA replication.

Authors:  Alessandro Costa; Iris V Hood; James M Berger
Journal:  Annu Rev Biochem       Date:  2013       Impact factor: 23.643

8.  Different residues on the surface of the Methanothermobacter thermautotrophicus MCM helicase interact with single- and double-stranded DNA.

Authors:  Nozomi Sakakibara; Rajesh Kasiviswanathan; Zvi Kelman
Journal:  Archaea       Date:  2010-12-01       Impact factor: 3.273

9.  Concerted loading of Mcm2-7 double hexamers around DNA during DNA replication origin licensing.

Authors:  Dirk Remus; Fabienne Beuron; Gökhan Tolun; Jack D Griffith; Edward P Morris; John F X Diffley
Journal:  Cell       Date:  2009-11-05       Impact factor: 41.582

10.  Activation of the MCM helicase from the thermophilic archaeon, Thermoplasma acidophilum by interactions with GINS and Cdc6-2.

Authors:  Hiromi Ogino; Sonoko Ishino; Gyri Teien Haugland; Nils-Kåre Birkeland; Daisuke Kohda; Yoshizumi Ishino
Journal:  Extremophiles       Date:  2014-08-09       Impact factor: 2.395

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