Literature DB >> 18641940

FlyBase : a database for the Drosophila research community.

Rachel Drysdale1.   

Abstract

FlyBase ( http://flybase.org ) is the primary database of integrated genetic and genomic data about the Drosophilidae, of which Drosophila melanogaster is the most extensively studied species. Information in FlyBase originates from a variety of sources ranging from large-scale genome projects to the primary research literature. Data-types include sequence-level gene models, molecular classification of gene product functions, mutant phenotypes, mutant lesions and chromosome aberrations, gene expression patterns, transgene insertions, and anatomical images. Query tools allow interrogation of FlyBase through DNA or protein sequence, by gene or mutant name, or through terms from the several ontologies used to capture functional, phenotypic, and anatomical data. Links between FlyBase and external databases provide extensive opportunity for extending exploration into other model organism databases and resources of biological and molecular information. This review will introduce the FlyBase web server and query tools.

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Year:  2008        PMID: 18641940     DOI: 10.1007/978-1-59745-583-1_3

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  95 in total

1.  Semantic integration of data on transcriptional regulation.

Authors:  Michael Baitaluk; Julia Ponomarenko
Journal:  Bioinformatics       Date:  2010-04-28       Impact factor: 6.937

2.  Evolution of a genomic regulatory domain: the role of gene co-option and gene duplication in the Enhancer of split complex.

Authors:  Elizabeth J Duncan; Peter K Dearden
Journal:  Genome Res       Date:  2010-05-10       Impact factor: 9.043

3.  A molecularly defined duplication set for the X chromosome of Drosophila melanogaster.

Authors:  Koen J T Venken; Ellen Popodi; Stacy L Holtzman; Karen L Schulze; Soo Park; Joseph W Carlson; Roger A Hoskins; Hugo J Bellen; Thomas C Kaufman
Journal:  Genetics       Date:  2010-09-27       Impact factor: 4.562

4.  Isolation, annotation and applications of expressed sequence tags from the olive fly, Bactrocera oleae.

Authors:  K T Tsoumani; A A Augustinos; E G Kakani; E Drosopoulou; P Mavragani-Tsipidou; K D Mathiopoulos
Journal:  Mol Genet Genomics       Date:  2010-10-27       Impact factor: 3.291

5.  Small RNAs derived from snoRNAs.

Authors:  Ryan J Taft; Evgeny A Glazov; Timo Lassmann; Yoshihide Hayashizaki; Piero Carninci; John S Mattick
Journal:  RNA       Date:  2009-05-27       Impact factor: 4.942

6.  A microfluidic device for whole-animal drug screening using electrophysiological measures in the nematode C. elegans.

Authors:  Shawn R Lockery; S Elizabeth Hulme; William M Roberts; Kristin J Robinson; Anna Laromaine; Theodore H Lindsay; George M Whitesides; Janis C Weeks
Journal:  Lab Chip       Date:  2012-05-15       Impact factor: 6.799

Review 7.  Understanding kidney disease: toward the integration of regulatory networks across species.

Authors:  Wenjun Ju; Frank C Brosius
Journal:  Semin Nephrol       Date:  2010-09       Impact factor: 5.299

8.  Toward a quantitative theory of intrinsically disordered proteins and their function.

Authors:  Jintao Liu; James R Faeder; Carlos J Camacho
Journal:  Proc Natl Acad Sci U S A       Date:  2009-11-10       Impact factor: 11.205

9.  RNAcode: robust discrimination of coding and noncoding regions in comparative sequence data.

Authors:  Stefan Washietl; Sven Findeiss; Stephan A Müller; Stefan Kalkhof; Martin von Bergen; Ivo L Hofacker; Peter F Stadler; Nick Goldman
Journal:  RNA       Date:  2011-02-28       Impact factor: 4.942

10.  An evolutionary consequence of dosage compensation on Drosophila melanogaster female X-chromatin structure?

Authors:  Yu Zhang; Brian Oliver
Journal:  BMC Genomics       Date:  2010-01-05       Impact factor: 3.969

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