Literature DB >> 18641162

Dynamics of glycolytic regulation during adaptation of Saccharomyces cerevisiae to fermentative metabolism.

Joost van den Brink1, André B Canelas, Walter M van Gulik, Jack T Pronk, Joseph J Heijnen, Johannes H de Winde, Pascale Daran-Lapujade.   

Abstract

The ability of baker's yeast (Saccharomyces cerevisiae) to rapidly increase its glycolytic flux upon a switch from respiratory to fermentative sugar metabolism is an important characteristic for many of its multiple industrial applications. An increased glycolytic flux can be achieved by an increase in the glycolytic enzyme capacities (V(max)) and/or by changes in the concentrations of low-molecular-weight substrates, products, and effectors. The goal of the present study was to understand the time-dependent, multilevel regulation of glycolytic enzymes during a switch from fully respiratory conditions to fully fermentative conditions. The switch from glucose-limited aerobic chemostat growth to full anaerobiosis and glucose excess resulted in rapid acceleration of fermentative metabolism. Although the capacities (V(max)) of the glycolytic enzymes did not change until 45 min after the switch, the intracellular levels of several substrates, products, and effectors involved in the regulation of glycolysis did change substantially during the initial 45 min (e.g., there was a buildup of the phosphofructokinase activator fructose-2,6-bisphosphate). This study revealed two distinct phases in the upregulation of glycolysis upon a switch to fermentative conditions: (i) an initial phase, in which regulation occurs completely through changes in metabolite levels; and (ii) a second phase, in which regulation is achieved through a combination of changes in V(max) and metabolite concentrations. This multilevel regulation study qualitatively explains the increase in flux through the glycolytic enzymes upon a switch of S. cerevisiae to fermentative conditions and provides a better understanding of the roles of different regulatory mechanisms that influence the dynamics of yeast glycolysis.

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Year:  2008        PMID: 18641162      PMCID: PMC2547023          DOI: 10.1128/AEM.01121-08

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  55 in total

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Authors:  M T A P Kresnowati; C Suarez-Mendez; M K Groothuizen; W A van Winden; J J Heijnen
Journal:  Biotechnol Bioeng       Date:  2007-05-01       Impact factor: 4.530

2.  The response of oscillating glycolysis to perturbations in the NADH/NAD system: a comparison between experiments and a computer model.

Authors:  O Richter; A Betz; C Giersch
Journal:  Biosystems       Date:  1975-07       Impact factor: 1.973

3.  Control of the glycolytic flux in Saccharomyces cerevisiae grown at low temperature: a multi-level analysis in anaerobic chemostat cultures.

Authors:  Siew Leng Tai; Pascale Daran-Lapujade; Marijke A H Luttik; Michael C Walsh; Jasper A Diderich; Gerard C Krijger; Walter M van Gulik; Jack T Pronk; Jean-Marc Daran
Journal:  J Biol Chem       Date:  2007-01-24       Impact factor: 5.157

4.  Network identification and flux quantification in the central metabolism of Saccharomyces cerevisiae under different conditions of glucose repression.

Authors:  A K Gombert; M Moreira dos Santos ; B Christensen; J Nielsen
Journal:  J Bacteriol       Date:  2001-02       Impact factor: 3.490

5.  The yeast glycerol 3-phosphatases Gpp1p and Gpp2p are required for glycerol biosynthesis and differentially involved in the cellular responses to osmotic, anaerobic, and oxidative stress.

Authors:  A K Pahlman; K Granath; R Ansell; S Hohmann; L Adler
Journal:  J Biol Chem       Date:  2000-10-31       Impact factor: 5.157

6.  Determination of the cytosolic free NAD/NADH ratio in Saccharomyces cerevisiae under steady-state and highly dynamic conditions.

Authors:  André B Canelas; Walter M van Gulik; Joseph J Heijnen
Journal:  Biotechnol Bioeng       Date:  2008-07-01       Impact factor: 4.530

7.  Effect of specific growth rate on fermentative capacity of baker's yeast.

Authors:  P Van Hoek; J P Van Dijken; J T Pronk
Journal:  Appl Environ Microbiol       Date:  1998-11       Impact factor: 4.792

8.  Analysis of in vivo kinetics of glycolysis in aerobic Saccharomyces cerevisiae by application of glucose and ethanol pulses.

Authors:  Diana Visser; Gertan A van Zuylen; Jan C van Dam; Michael R Eman; Angela Pröll; Cor Ras; Liang Wu; Walter M van Gulik; Joseph J Heijnen
Journal:  Biotechnol Bioeng       Date:  2004-10-20       Impact factor: 4.530

9.  In vivo analysis of metabolic dynamics in Saccharomyces cerevisiae: II. Mathematical model.

Authors:  M Rizzi; M Baltes; U Theobald; M Reuss
Journal:  Biotechnol Bioeng       Date:  1997-08-20       Impact factor: 4.530

10.  The cooperative binding of fructose-1,6-bisphosphate to yeast pyruvate kinase.

Authors:  T H Murcott; H Gutfreund; H Muirhead
Journal:  EMBO J       Date:  1992-11       Impact factor: 11.598

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  23 in total

1.  Gene expression regulates metabolite homeostasis during the Crabtree effect: Implications for the adaptation and evolution of Metabolism.

Authors:  Douglas L Rothman; Stephen C Stearns; Robert G Shulman
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3.  Integrated multilaboratory systems biology reveals differences in protein metabolism between two reference yeast strains.

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Journal:  Nat Commun       Date:  2010       Impact factor: 14.919

4.  Optimization of a blueprint for in vitro glycolysis by metabolic real-time analysis.

Authors:  Matthias Bujara; Michael Schümperli; René Pellaux; Matthias Heinemann; Sven Panke
Journal:  Nat Chem Biol       Date:  2011-03-20       Impact factor: 15.040

5.  Tradeoff between enzyme and metabolite efficiency maintains metabolic homeostasis upon perturbations in enzyme capacity.

Authors:  Sarah-Maria Fendt; Joerg Martin Buescher; Florian Rudroff; Paola Picotti; Nicola Zamboni; Uwe Sauer
Journal:  Mol Syst Biol       Date:  2010-04-13       Impact factor: 11.429

6.  Metabolic effects of influenza virus infection in cultured animal cells: Intra- and extracellular metabolite profiling.

Authors:  Joachim B Ritter; Aljoscha S Wahl; Susann Freund; Yvonne Genzel; Udo Reichl
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7.  The E3 ubiquitin ligase Pib1 regulates effective gluconeogenic shutdown upon glucose availability.

Authors:  Vineeth Vengayil; Zeenat Rashida; Sunil Laxman
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8.  Adriamycin inhibits glycolysis through downregulation of key enzymes in Saccharomyces cerevisiae.

Authors:  Uma Priya Mohan; Selvaraj Kunjiappan; P B Tirupathi Pichiah; Sankarganesh Arunachalam
Journal:  3 Biotech       Date:  2021-01-02       Impact factor: 2.406

9.  Control of ATP homeostasis during the respiro-fermentative transition in yeast.

Authors:  Thomas Walther; Maite Novo; Katrin Rössger; Fabien Létisse; Marie-Odile Loret; Jean-Charles Portais; Jean-Marie François
Journal:  Mol Syst Biol       Date:  2010-01-19       Impact factor: 11.429

10.  Similar temperature dependencies of glycolytic enzymes: an evolutionary adaptation to temperature dynamics?

Authors:  Luisa Ana B Cruz; Marit Hebly; Giang-Huong Duong; Sebastian A Wahl; Jack T Pronk; Joseph J Heijnen; Pascale Daran-Lapujade; Walter M van Gulik
Journal:  BMC Syst Biol       Date:  2012-12-07
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