Literature DB >> 15449293

Analysis of in vivo kinetics of glycolysis in aerobic Saccharomyces cerevisiae by application of glucose and ethanol pulses.

Diana Visser1, Gertan A van Zuylen, Jan C van Dam, Michael R Eman, Angela Pröll, Cor Ras, Liang Wu, Walter M van Gulik, Joseph J Heijnen.   

Abstract

This article presents the dynamic responses of several intra- and extracellular components of an aerobic, glucose-limited chemostat culture of Saccharomyces cerevisiae to glucose and ethanol pulses within a time window of 75 sec. Even though the ethanol pulse cannot perturb the glycolytic pathway directly, a distinct response of the metabolites at the lower part of glycolysis was found. We suggest that this response is an indirect effect, caused by perturbation of the NAD/NADH ratio, which is a direct consequence of the conversion of ethanol into acetaldehyde. This effect of the NAD/NADH ratio on glycolysis might serve as an additional explanation for the observed decrease of 3PG, 2PG, and PEP during a glucose pulse. The responses measured during the ethanol pulse were used to evaluate the allosteric regulation of glycolysis. Our results confirm that FBP stimulates pyruvate kinase and suggest that this effect is pronounced. Furthermore, it appears that PEP does not play an important role in the allosteric regulation of phosphofructo kinase.

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Year:  2004        PMID: 15449293     DOI: 10.1002/bit.20235

Source DB:  PubMed          Journal:  Biotechnol Bioeng        ISSN: 0006-3592            Impact factor:   4.530


  16 in total

Review 1.  Systems biology from micro-organisms to human metabolic diseases: the role of detailed kinetic models.

Authors:  Barbara M Bakker; Karen van Eunen; Jeroen A L Jeneson; Natal A W van Riel; Frank J Bruggeman; Bas Teusink
Journal:  Biochem Soc Trans       Date:  2010-10       Impact factor: 5.407

2.  Systems-level engineering of nonfermentative metabolism in yeast.

Authors:  Caleb J Kennedy; Patrick M Boyle; Zeev Waks; Pamela A Silver
Journal:  Genetics       Date:  2009-06-29       Impact factor: 4.562

3.  Short-term metabolome dynamics and carbon, electron, and ATP balances in chemostat-grown Saccharomyces cerevisiae CEN.PK 113-7D following a glucose pulse.

Authors:  Liang Wu; Jan van Dam; Dick Schipper; M T A Penia Kresnowati; Angela M Proell; Cor Ras; Wouter A van Winden; Walter M van Gulik; Joseph J Heijnen
Journal:  Appl Environ Microbiol       Date:  2006-05       Impact factor: 4.792

Review 4.  Fast Sampling of the Cellular Metabolome.

Authors:  Walter M van Gulik; Andre B Canelas; Hilal Taymaz-Nikerel; Rutger D Douma; Lodewijk P de Jonge; Joseph J Heijnen
Journal:  Methods Mol Biol       Date:  2022

5.  Engineering a synthetic dual-organism system for hydrogen production.

Authors:  Zeev Waks; Pamela A Silver
Journal:  Appl Environ Microbiol       Date:  2009-02-06       Impact factor: 4.792

6.  Activation of sirtuin 1 attenuates cerebral ventricular streptozotocin-induced tau hyperphosphorylation and cognitive injuries in rat hippocampi.

Authors:  Lai-Ling Du; Jia-Zhao Xie; Xiang-Shu Cheng; Xiao-Hong Li; Fan-Li Kong; Xia Jiang; Zhi-Wei Ma; Jian-Zhi Wang; Chen Chen; Xin-Wen Zhou
Journal:  Age (Dordr)       Date:  2013-10-20

7.  Dynamics of glycolytic regulation during adaptation of Saccharomyces cerevisiae to fermentative metabolism.

Authors:  Joost van den Brink; André B Canelas; Walter M van Gulik; Jack T Pronk; Joseph J Heijnen; Johannes H de Winde; Pascale Daran-Lapujade
Journal:  Appl Environ Microbiol       Date:  2008-07-18       Impact factor: 4.792

8.  Different expression systems for production of recombinant proteins in Saccharomyces cerevisiae.

Authors:  Zihe Liu; Keith E J Tyo; José L Martínez; Dina Petranovic; Jens Nielsen
Journal:  Biotechnol Bioeng       Date:  2012-01-17       Impact factor: 4.530

9.  Control of ATP homeostasis during the respiro-fermentative transition in yeast.

Authors:  Thomas Walther; Maite Novo; Katrin Rössger; Fabien Létisse; Marie-Odile Loret; Jean-Charles Portais; Jean-Marie François
Journal:  Mol Syst Biol       Date:  2010-01-19       Impact factor: 11.429

10.  Testing biochemistry revisited: how in vivo metabolism can be understood from in vitro enzyme kinetics.

Authors:  Karen van Eunen; José A L Kiewiet; Hans V Westerhoff; Barbara M Bakker
Journal:  PLoS Comput Biol       Date:  2012-04-26       Impact factor: 4.475

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