Literature DB >> 12524264

On the role of stochastic channel behavior in intracellular Ca2+ dynamics.

Martin Falcke1.   

Abstract

I present a stochastic model for intracellular Ca(2+) oscillations. The model starts from stochastic binding and dissociation of Ca(2+) to binding sites on a single subunit of the IP(3)-receptor channel but is capable of simulating large numbers of clusters for many oscillation periods too. I find oscillations with variable periods ranging from 17 s to 120 s and a standard deviation well in the experimentally observed range. Long period oscillations can be perceived as nucleation phenomenon and can be observed for a large variety of single channel dynamics. Their period depends on the geometric characteristics of the cluster array. Short periods are in the range of the time scale of channel dynamics. Both long and short period oscillations occur for parameters with a nonoscillatory deterministic regime.

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Year:  2003        PMID: 12524264      PMCID: PMC1302592          DOI: 10.1016/S0006-3495(03)74831-0

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  34 in total

1.  Ca2+ sparks and Ca2+ waves in saponin-permeabilized rat ventricular myocytes.

Authors:  V Lukyanenko; S Gyorke
Journal:  J Physiol       Date:  1999-12-15       Impact factor: 5.182

2.  Microscopic properties of elementary Ca2+ release sites in non-excitable cells.

Authors:  D Thomas; P Lipp; S C Tovey; M J Berridge; W Li; R Y Tsien; M D Bootman
Journal:  Curr Biol       Date:  2000-01-13       Impact factor: 10.834

3.  Stochastic spreading of intracellular Ca(2+) release.

Authors:  M Falcke; L Tsimring; H Levine
Journal:  Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics       Date:  2000-08

4.  Dispersion gap and localized spiral waves in a model for intracellular Ca2+ dynamics.

Authors:  M Falcke; M Or-Guil; M Bär
Journal:  Phys Rev Lett       Date:  2000-05-15       Impact factor: 9.161

5.  A dynamic model of the type-2 inositol trisphosphate receptor.

Authors:  James Sneyd; Jean-Francois Dufour
Journal:  Proc Natl Acad Sci U S A       Date:  2002-02-12       Impact factor: 11.205

6.  Initiation of IP(3)-mediated Ca(2+) waves in Xenopus oocytes.

Authors:  J Marchant; N Callamaras; I Parker
Journal:  EMBO J       Date:  1999-10-01       Impact factor: 11.598

7.  Agonist-dependent phosphorylation of the inositol 1,4,5-trisphosphate receptor: A possible mechanism for agonist-specific calcium oscillations in pancreatic acinar cells.

Authors:  A P LeBeau; D I Yule; G E Groblewski; J Sneyd
Journal:  J Gen Physiol       Date:  1999-06       Impact factor: 4.086

8.  Phasic characteristic of elementary Ca(2+) release sites underlies quantal responses to IP(3).

Authors:  N Callamaras; I Parker
Journal:  EMBO J       Date:  2000-07-17       Impact factor: 11.598

Review 9.  Molecular properties of inositol 1,4,5-trisphosphate receptors.

Authors:  S Patel; S K Joseph; A P Thomas
Journal:  Cell Calcium       Date:  1999-03       Impact factor: 6.817

10.  Single-channel properties in endoplasmic reticulum membrane of recombinant type 3 inositol trisphosphate receptor.

Authors:  D O Mak; S McBride; V Raghuram; Y Yue; S K Joseph; J K Foskett
Journal:  J Gen Physiol       Date:  2000-03       Impact factor: 4.086

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  49 in total

1.  Release currents of IP(3) receptor channel clusters and concentration profiles.

Authors:  R Thul; M Falcke
Journal:  Biophys J       Date:  2004-05       Impact factor: 4.033

2.  Signaling in small subcellular volumes. I. Stochastic and diffusion effects on individual pathways.

Authors:  Upinder S Bhalla
Journal:  Biophys J       Date:  2004-08       Impact factor: 4.033

3.  Timescales of IP(3)-evoked Ca(2+) spikes emerge from Ca(2+) puffs only at the cellular level.

Authors:  Kevin Thurley; Ian F Smith; Stephen C Tovey; Colin W Taylor; Ian Parker; Martin Falcke
Journal:  Biophys J       Date:  2011-12-07       Impact factor: 4.033

4.  Linking flickering to waves and whole-cell oscillations in a mitochondrial network model.

Authors:  Melissa Nivala; Paavo Korge; Michael Nivala; James N Weiss; Zhilin Qu
Journal:  Biophys J       Date:  2011-11-01       Impact factor: 4.033

5.  A mathematical analysis of agonist- and KCl-induced Ca(2+) oscillations in mouse airway smooth muscle cells.

Authors:  Inga Y Wang; Yan Bai; Michael J Sanderson; James Sneyd
Journal:  Biophys J       Date:  2010-04-07       Impact factor: 4.033

6.  Transition from stochastic to deterministic behavior in calcium oscillations.

Authors:  Ursula Kummer; Borut Krajnc; Jürgen Pahle; Anne K Green; C Jane Dixon; Marko Marhl
Journal:  Biophys J       Date:  2005-07-01       Impact factor: 4.033

7.  The number and spatial distribution of IP3 receptors underlying calcium puffs in Xenopus oocytes.

Authors:  Jianwei Shuai; Heather J Rose; Ian Parker
Journal:  Biophys J       Date:  2006-09-15       Impact factor: 4.033

Review 8.  Calcium wave signaling in cancer cells.

Authors:  Jai Parkash; Kamlesh Asotra
Journal:  Life Sci       Date:  2010-09-25       Impact factor: 5.037

9.  How does intracellular Ca2+ oscillate: by chance or by the clock?

Authors:  Alexander Skupin; Helmut Kettenmann; Ulrike Winkler; Maria Wartenberg; Heinrich Sauer; Stephen C Tovey; Colin W Taylor; Martin Falcke
Journal:  Biophys J       Date:  2007-12-07       Impact factor: 4.033

10.  Hybrid stochastic and deterministic simulations of calcium blips.

Authors:  S Rüdiger; J W Shuai; W Huisinga; C Nagaiah; G Warnecke; I Parker; M Falcke
Journal:  Biophys J       Date:  2007-05-11       Impact factor: 4.033

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