Literature DB >> 18639514

AutoDecon, a deconvolution algorithm for identification and characterization of luteinizing hormone secretory bursts: description and validation using synthetic data.

Michael L Johnson1, Lenore Pipes, Paula P Veldhuis, Leon S Farhy, David G Boyd, William S Evans.   

Abstract

Hormone signaling is often pulsatile, and multiparameter deconvolution procedures have long been used to identify and characterize secretory events. However, the existing programs have serious limitations, including the subjective nature of initial peak selection, lack of statistical verification of presumed bursts, and user-unfriendliness of the application. Here we describe a novel deconvolution program, AutoDecon, which addresses these concerns. We validate AutoDecon for application to serum luteinizing hormone (LH) concentration time series using synthetic data mimicking real data from normal women and then comparing the performance of AutoDecon with the performance of the widely employed hormone pulsatility analysis program Cluster. The sensitivity of AutoDecon is higher than that of Cluster ( approximately 96% vs. 80%, P=0.001). However, Cluster had a lower false-positive detection rate than did AutoDecon (6% vs. 1%, P=0.001). Further analysis demonstrated that the pulsatility parameters recovered by AutoDecon were indistinguishable from those characterizing the synthetic data and that sampling at 5- or 10-min intervals was optimal for maximizing the sensitivity rates for LH. Accordingly, AutoDecon presents a viable nonsubjective alternative to previous pulse detection algorithms for the analysis of LH data. It is applicable to other pulsatile hormone concentration time series and many other pulsatile phenomena. The software is free and downloadable at http://mljohnson.pharm.virginia.edu/home.html.

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Year:  2008        PMID: 18639514      PMCID: PMC2557553          DOI: 10.1016/j.ab.2008.07.001

Source DB:  PubMed          Journal:  Anal Biochem        ISSN: 0003-2697            Impact factor:   3.365


  21 in total

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2.  Deconvolution analysis as a hormone pulse-detection algorithm.

Authors:  Michael L Johnson; Amelia Virostko; Johannes D Veldhuis; William S Evans
Journal:  Methods Enzymol       Date:  2004       Impact factor: 1.600

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  26 in total

1.  Validation of a deconvolution procedure (AutoDecon) for identification and characterization of fasting insulin secretory bursts.

Authors:  Michael L Johnson; Paula P Veldhuis; Tereza Grimmichova; Leon S Farhy; William S Evans
Journal:  J Diabetes Sci Technol       Date:  2010-09-01

2.  Biomathematical modeling of pulsatile hormone secretion: a historical perspective.

Authors:  William S Evans; Leon S Farhy; Michael L Johnson
Journal:  Methods Enzymol       Date:  2009       Impact factor: 1.600

3.  Progesterone-Mediated Inhibition of the GnRH Pulse Generator: Differential Sensitivity as a Function of Sleep Status.

Authors:  Su Hee Kim; Jessica A Lundgren; Ruchi Bhabhra; Jessicah S Collins; James T Patrie; Christine M Burt Solorzano; John C Marshall; Christopher R McCartney
Journal:  J Clin Endocrinol Metab       Date:  2018-03-01       Impact factor: 5.958

4.  Oxytocin secretion is pulsatile in men and is related to social-emotional functioning.

Authors:  Charumathi Baskaran; Franziska Plessow; Lisseth Silva; Elisa Asanza; Dean Marengi; Kamryn T Eddy; Patrick M Sluss; Michael L Johnson; Madhusmita Misra; Elizabeth A Lawson
Journal:  Psychoneuroendocrinology       Date:  2017-07-24       Impact factor: 4.905

5.  Impact of Adiposity and Fat Distribution on the Dynamics of Adrenocorticotropin and Cortisol Rhythms.

Authors:  Ferdinand Roelfsema; Alberto M Pereira; Johannes D Veldhuis
Journal:  Curr Obes Rep       Date:  2014-12

Review 6.  Optimizing reduction in basal hyperglucagonaemia to repair defective glucagon counterregulation in insulin deficiency.

Authors:  L S Farhy; A L McCall
Journal:  Diabetes Obes Metab       Date:  2011-10       Impact factor: 6.577

7.  Influence of Sleep Stage on LH Pulse Initiation in the Normal Late Follicular Phase and in Polycystic Ovary Syndrome.

Authors:  Christine Lu; Eleanor G Hutchens; Leon S Farhy; Heather G Bonner; Paul M Suratt; Christopher R McCartney
Journal:  Neuroendocrinology       Date:  2018-03-05       Impact factor: 4.914

8.  Estradiol and progesterone-induced slowing of gonadotropin-releasing hormone pulse frequency is not reversed by subsequent administration of mifepristone.

Authors:  Christopher R McCartney; Susan K Blank; John C Marshall
Journal:  Endocrine       Date:  2009-07-16       Impact factor: 3.633

9.  Acupuncture for ovulation induction in polycystic ovary syndrome: a randomized controlled trial.

Authors:  Julia Johansson; Leanne Redman; Paula P Veldhuis; Antonina Sazonova; Fernand Labrie; Göran Holm; Gudmundur Johannsson; Elisabet Stener-Victorin
Journal:  Am J Physiol Endocrinol Metab       Date:  2013-03-12       Impact factor: 4.310

10.  AutoDecon: a robust numerical method for the quantification of pulsatile events.

Authors:  Michael L Johnson; Lenore Pipes; Paula P Veldhuis; Leon S Farhy; Ralf Nass; Michael O Thorner; William S Evans
Journal:  Methods Enzymol       Date:  2009       Impact factor: 1.600

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