| Literature DB >> 18639233 |
Jonas Donner1, Sami Pirkola, Kaisa Silander, Laura Kananen, Joseph D Terwilliger, Jouko Lönnqvist, Leena Peltonen, Iiris Hovatta.
Abstract
BACKGROUND: Human anxiety disorders are complex diseases with largely unknown etiology. We have taken a cross-species approach to identify genes that regulate anxiety-like behavior with inbred mouse strains that differ in their innate anxiety levels as a model. We previously identified 17 genes with expression levels that correlate with anxiety behavior across the studied strains. In the present study, we tested their 13 known human homologues as candidate genes for human anxiety disorders with a genetic association study.Entities:
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Year: 2008 PMID: 18639233 PMCID: PMC2682432 DOI: 10.1016/j.biopsych.2008.06.002
Source DB: PubMed Journal: Biol Psychiatry ISSN: 0006-3223 Impact factor: 13.382
Demographic Characteristics of the Health 2000 Anxiety Disorder Study Sample
| Diagnostic Group | DSM-IV Cases | DSM-IV Sub-Threshold Cases | Cases Total | Controls | Total | Men | Women | Mean Age ± SD |
|---|---|---|---|---|---|---|---|---|
| Panic Disorder | 108 | 0 | 108 | 218 | 326 | 106 (32.5%) | 220 (67.5%) | 46.7 ± 11.3 |
| Generalized Anxiety Disorder | 73 | 30 | 103 | 206 | 309 | 122 (39.5%) | 187 (60.5%) | 50.6 ± 12.6 |
| Social Phobia | 58 | 7 | 65 | 133 | 198 | 99 (50.0%) | 99 (50.0%) | 45.4 ± 10.2 |
| Agoraphobia | 31 | 15 | 46 | 94 | 140 | 60 (42.9%) | 80 (57.1%) | 52.8 ± 13.0 |
| Phobia, not otherwise specified | 58 | 0 | 58 | 121 | 179 | 54 (30.2%) | 125 (69.8%) | 54.6 ± 13.3 |
| All Studied Anxiety Disorders | 282 | 39 | 321 | 653 | 974 | 357 (36.7%) | 617 (63.3%) | 49.8 ± 12.7 |
Core diagnostic group.
Extended diagnostic group.
Includes both panic disorder with and without agoraphobia.
Investigated Candidate Genes and Number of Analyzed SNPs/Gene
| Symbol | Gene Information | Stage I | Stage II | Total | ||||
|---|---|---|---|---|---|---|---|---|
| Name | Position | Size (kb) | Non-Synonymous | tagSNPs | miRNA Sites | tagSNPs | ||
| Aminolevulinate, δ-, dehydratase | 9q33.1 | 15.0 | 1 (1) | 7 | 2 (3) | 4 | 14 (4) | |
| Cadherin-2, type 1, N-cadherin (neuronal) | 18q11.2 | 226.3 | 1 (2) | 10 | — | 10 | 21 (2) | |
| Cleavage and polyadenylation specificity factor 4, 30kDa | 7q22.1 | 18.3 | — | 4 | — | — | 4 | |
| Dynein, light chain, LC8-type 2 | 17q22 | 6.0 | — | 4 | — | 2 (1) | 6 (1) | |
| Erythrocyte membrane protein band 4.1 like 4A | 5q22.2 | 256.7 | 3 | 10 (1) | — | 14 | 27 (1) | |
| Epoxide hydrolase 1, microsomal (xenobiotic) | 1q42.1 | 20.3 | 2 (5) | 6 | — | — | 8 (5) | |
| Glyoxalase I | 6p21.3-p21.1 | 27.2 | 1 (2) | 6 | - (1) | 5 | 12 (3) | |
| Glutathione reductase | 8p21.1 | 49.0 | 2 (6) | 7 | — | 7 | 16 (6) | |
| Prosaposin (variant Gaucher disease and metachromatic leukodystrophy) | 10q21-q22 | 35.0 | - (3) | 9 | 1 (1) | 5 | 15 (4) | |
| Prostaglandin D2 synthase 21kDa (brain) | 9q34.2-q34.3 | 4.2 | - (3) | 4 | — | 2 (1) | 6 (4) | |
| S100 calcium binding protein A10 | 1q21 | 21.0 | - (2) | 3 | — | — | 3 (2) | |
| Sodium channel, voltage-gated, type I, β | 19q13.1 | 9.8 | - (2) | 3 | — | — | 3 (2) | |
| Solute carrier family 15 (H+/peptide transporter), member 2 | 3q13.33 | 47.2 | 2 (3) | 7 | — | — | 9 (3) | |
| Total | 12 (29) | 80 (1) | 3 (5) | 49 (2) | 144 (37) | |||
Number of genotyped single nucleotide polymorphisms (SNPs) that were monomorphic in our study sample is shown in parenthesis.
Putative polymorphic microRNA (miRNA) binding sites selected with the Patrocles database.
SNPs with p Value ≤ .01 in the LRT for Allelic Association
| Gene | SNP rs # | Alleles [A1/A2] | Group | Allele Frequencies | Allelic LRT | Diagnostic Group | |
|---|---|---|---|---|---|---|---|
| A1 | A2 | ||||||
| rs818702 | A/G | Cases | .884 | .116 | .008 | SOCPH | |
| Controls | .761 | .239 | |||||
| rs7240351 | A/G | Cases | .333 | .667 | .006 | SOCPH | |
| Controls | .488 | .513 | |||||
| rs7719346 | A/G | Cases | .140 | .860 | .008 | GAD | |
| Controls | .248 | .752 | |||||
| rs1464766 | A/G | Cases | .255 | .745 | .010 | PD | |
| Controls | .350 | .651 | |||||
| rs12657885 | C/T | Cases | .918 | .083 | .010 | GAD | |
| Controls | .849 | .151 | |||||
| rs4746097 | C/T | Cases | .729 | .271 | .004 | PD | |
| Controls | .616 | .384 | |||||
| rs11597008 | C/T | Cases | .615 | .385 | .008 | PD | |
| Controls | .502 | .498 | |||||
| rs4880179 | A/G | Cases | .053 | .947 | .010 | GAD | |
| Controls | .015 | .985 | |||||
Empirical p values from 10,000 permutations are shown. SNP, single nucleotide polymorphism; LRT, likelihood-ratio test; SOCPH, social phobia; GAD, generalized anxiety disorder; PD, panic disorder; refer to Table 2 for gene names.
DSM-IV core diagnosis.
Rs-numbers of markers genotyped in stage II.
DSM-IV extended diagnosis.
Two- and Three-Marker Haplotypes with Global p Value ≤ .01 in Sliding Window Analysis
| Gene | Markers | Haplotype | Haplotype Frequencies | Global | Diagnostic Group | |
|---|---|---|---|---|---|---|
| Cases | Controls | |||||
| rs11789221 - rs8177822 - rs818708 | C-A-C | .014 | .002 | .006 | ANX | |
| C-C-C | .578 | .607 | ||||
| C-C-T | .408 | .391 | ||||
| rs818702 - rs11789221 - rs8177822 | A-C-A | .036 | .000 | .0009 | SOCPH | |
| A-C-C | .848 | .766 | ||||
| G-C-C | .116 | .234 | ||||
| rs1041985 - rs7240351 | C-A | .333 | .487 | .001 | SOCPH | |
| C-G | .317 | .160 | ||||
| T-G | .350 | .353 | ||||
| rs10132 - rs9900038 - rs9902118 | A-G-C | .131 | .061 | .009 | GAD | |
| A-G-T | .621 | .717 | ||||
| G-A-C | .248 | .222 | ||||
| rs7719346 - rs1464766 | A-A | .053 | .197 | .006 | SOCPH | |
| A-G | .174 | .124 | ||||
| G-A | .201 | .159 | ||||
| G-G | .572 | .521 | ||||
| rs7092990 - rs4746097 | C-C | .729 | .616 | .008 | PD | |
| C-T | .196 | .310 | ||||
| T-T | .075 | .074 | ||||
| rs7092990 - rs4746097 - rs11597008 | C-C-C | .612 | .552 | .008 | ANX | |
| C-C-T | .100 | .116 | ||||
| C-T-T | .197 | .259 | ||||
| T-T-T | .091 | .073 | ||||
Empirical p values from 10 000 permutations are shown. ANX, all studied anxiety disorders; SOCPH, social phobia; GAD, generalized anxiety disorder; PD, panic disorder; refer to Table 2 for gene names.
DSM-IV core diagnosis.
DSM-IV extended diagnosis.
Figure 1Genomic structure, relative single nucleotide polymorphism (SNP) positions, and linkage disequilibrium (LD) plots for the six genes showing evidence for association. The SNP haplotype windows with global p values ≤ .01 are indicated above the genomic structure of the gene. The shown haplotype-based p value for EPB41L4A is from an analysis of two non-adjacent SNPs. The rs-numbers of SNPs showing p ≤ .01 in the single-point analysis are highlighted in green. The triangular plots represent pairwise comparisons of intermarker LD, measured in D'. The span of the coding sequence of each gene is depicted with a green line. Figure modified from Locusview2.0 output (T. Petryshen, A. Kirby, and M. Ainscow, unpublished software).