Literature DB >> 18634875

Uncovering mechanisms of bistability in biological systems.

Joseph R Pomerening1.   

Abstract

As the systems biology era progresses, theoreticians and experimentalists continue uncovering the molecular mechanisms that underlie the regulation of complex cellular phenomena, including those governing proliferation, differentiation, and death. The discovery of bistability in cellular responses and their signaling pathways has become a recurring theme, and prompted strong interest in understanding both the design and function of these networks. Modeling these systems has been crucial in assisting experimentalists to better understand how this and other types of behavior can emerge from a subset of regulators, and also to analyze and identify systems-level characteristics that would otherwise be difficult to intuit. In this review, recent advances in both theoretical and experimental work investigating the mechanistic as well as biological basis for bistability will be presented. These will include the role of positive feedback loops, the potential function of dual phosphorylation cycles, and substrate competition as a means of generating ultrasensitivity.

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Year:  2008        PMID: 18634875     DOI: 10.1016/j.copbio.2008.06.009

Source DB:  PubMed          Journal:  Curr Opin Biotechnol        ISSN: 0958-1669            Impact factor:   9.740


  33 in total

1.  Emergent bistability: effects of additive and multiplicative noise.

Authors:  S Ghosh; S Banerjee; I Bose
Journal:  Eur Phys J E Soft Matter       Date:  2012-02-23       Impact factor: 1.890

2.  The sensitivity of memory consolidation and reconsolidation to inhibitors of protein synthesis and kinases: computational analysis.

Authors:  Yili Zhang; Paul Smolen; Douglas A Baxter; John H Byrne
Journal:  Learn Mem       Date:  2010-08-24       Impact factor: 2.460

3.  A combination of multisite phosphorylation and substrate sequestration produces switchlike responses.

Authors:  Xinfeng Liu; Lee Bardwell; Qing Nie
Journal:  Biophys J       Date:  2010-04-21       Impact factor: 4.033

4.  Noise-induced regime shifts: A quantitative characterization.

Authors:  Sayantari Ghosh; Amit Kumar Pal; Indrani Bose
Journal:  Eur Phys J E Soft Matter       Date:  2013-10-28       Impact factor: 1.890

Review 5.  Systems pathology--or how to solve the complex problem of predictive pathology.

Authors:  Manfred Dietel; Reinhold Schäfer
Journal:  Virchows Arch       Date:  2008-09-13       Impact factor: 4.064

6.  Visualization of JNK activity dynamics with a genetically encoded fluorescent biosensor.

Authors:  Matthew Fosbrink; Nwe-Nwe Aye-Han; Raymond Cheong; Andre Levchenko; Jin Zhang
Journal:  Proc Natl Acad Sci U S A       Date:  2010-03-08       Impact factor: 11.205

7.  Modeling the light- and redox-dependent interaction of PpsR/AppA in Rhodobacter sphaeroides.

Authors:  Rakesh Pandey; Dietrich Flockerzi; Marcus J B Hauser; Ronny Straube
Journal:  Biophys J       Date:  2011-05-18       Impact factor: 4.033

8.  Towards a dynamical network view of brain ischemia and reperfusion. Part II: a post-ischemic neuronal state space.

Authors:  Donald J Degracia
Journal:  J Exp Stroke Transl Med       Date:  2010

9.  Origins of binary gene expression in post-transcriptional regulation by microRNAs.

Authors:  I Bose; S Ghosh
Journal:  Eur Phys J E Soft Matter       Date:  2012-10-15       Impact factor: 1.890

10.  Stochastic modeling of B lymphocyte terminal differentiation and its suppression by dioxin.

Authors:  Qiang Zhang; Sudin Bhattacharya; Douglas E Kline; Robert B Crawford; Rory B Conolly; Russell S Thomas; Norbert E Kaminski; Melvin E Andersen
Journal:  BMC Syst Biol       Date:  2010-04-01
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