Literature DB >> 18618010

Classes of complex networks defined by role-to-role connectivity profiles.

Roger Guimerà1, Marta Sales-Pardo, Luís A N Amaral.   

Abstract

In physical, biological, technological and social systems, interactions between units give rise to intricate networks. These-typically non-trivial-structures, in turn, critically affect the dynamics and properties of the system. The focus of most current research on complex networks is, still, on global network properties. A caveat of this approach is that the relevance of global properties hinges on the premise that networks are homogeneous, whereas most real-world networks have a markedly modular structure. Here, we report that networks with different functions, including the Internet, metabolic, air transportation and protein interaction networks, have distinct patterns of connections among nodes with different roles, and that, as a consequence, complex networks can be classified into two distinct functional classes on the basis of their link type frequency. Importantly, we demonstrate that these structural features cannot be captured by means of often studied global properties.

Year:  2007        PMID: 18618010      PMCID: PMC2447920          DOI: 10.1038/nphys489

Source DB:  PubMed          Journal:  Nat Phys        ISSN: 1745-2473            Impact factor:   20.034


  26 in total

1.  Emergence of scaling in random networks

Authors: 
Journal:  Science       Date:  1999-10-15       Impact factor: 47.728

2.  Specificity and stability in topology of protein networks.

Authors:  Sergei Maslov; Kim Sneppen
Journal:  Science       Date:  2002-05-03       Impact factor: 47.728

3.  Large-scale topological and dynamical properties of the Internet.

Authors:  Alexei Vázquez; Romualdo Pastor-Satorras; Alessandro Vespignani
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2002-06-28

4.  Network motifs: simple building blocks of complex networks.

Authors:  R Milo; S Shen-Orr; S Itzkovitz; N Kashtan; D Chklovskii; U Alon
Journal:  Science       Date:  2002-10-25       Impact factor: 47.728

5.  Assortative mixing in networks.

Authors:  M E J Newman
Journal:  Phys Rev Lett       Date:  2002-10-28       Impact factor: 9.161

6.  Evidence for dynamically organized modularity in the yeast protein-protein interaction network.

Authors:  Jing-Dong J Han; Nicolas Bertin; Tong Hao; Debra S Goldberg; Gabriel F Berriz; Lan V Zhang; Denis Dupuy; Albertha J M Walhout; Michael E Cusick; Frederick P Roth; Marc Vidal
Journal:  Nature       Date:  2004-06-09       Impact factor: 49.962

7.  Statistical analysis of airport network of China.

Authors:  W Li; X Cai
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2004-04-26

Review 8.  The architecture of complex weighted networks.

Authors:  A Barrat; M Barthélemy; R Pastor-Satorras; A Vespignani
Journal:  Proc Natl Acad Sci U S A       Date:  2004-03-08       Impact factor: 11.205

9.  Functional cartography of complex metabolic networks.

Authors:  Roger Guimerà; Luís A Nunes Amaral
Journal:  Nature       Date:  2005-02-24       Impact factor: 49.962

10.  A map of the interactome network of the metazoan C. elegans.

Authors:  Siming Li; Christopher M Armstrong; Nicolas Bertin; Hui Ge; Stuart Milstein; Mike Boxem; Pierre-Olivier Vidalain; Jing-Dong J Han; Alban Chesneau; Tong Hao; Debra S Goldberg; Ning Li; Monica Martinez; Jean-François Rual; Philippe Lamesch; Lai Xu; Muneesh Tewari; Sharyl L Wong; Lan V Zhang; Gabriel F Berriz; Laurent Jacotot; Philippe Vaglio; Jérôme Reboul; Tomoko Hirozane-Kishikawa; Qianru Li; Harrison W Gabel; Ahmed Elewa; Bridget Baumgartner; Debra J Rose; Haiyuan Yu; Stephanie Bosak; Reynaldo Sequerra; Andrew Fraser; Susan E Mango; William M Saxton; Susan Strome; Sander Van Den Heuvel; Fabio Piano; Jean Vandenhaute; Claude Sardet; Mark Gerstein; Lynn Doucette-Stamm; Kristin C Gunsalus; J Wade Harper; Michael E Cusick; Frederick P Roth; David E Hill; Marc Vidal
Journal:  Science       Date:  2004-01-02       Impact factor: 47.728

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  97 in total

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2.  Robust classification of salient links in complex networks.

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Journal:  Nat Commun       Date:  2012-05-29       Impact factor: 14.919

3.  Topological network alignment uncovers biological function and phylogeny.

Authors:  Oleksii Kuchaiev; Tijana Milenkovic; Vesna Memisevic; Wayne Hayes; Natasa Przulj
Journal:  J R Soc Interface       Date:  2010-03-17       Impact factor: 4.118

4.  The modular and integrative functional architecture of the human brain.

Authors:  Maxwell A Bertolero; B T Thomas Yeo; Mark D'Esposito
Journal:  Proc Natl Acad Sci U S A       Date:  2015-11-23       Impact factor: 11.205

5.  Matching-centrality decomposition and the forecasting of new links in networks.

Authors:  Rudolf P Rohr; Russell E Naisbit; Christian Mazza; Louis-Félix Bersier
Journal:  Proc Biol Sci       Date:  2016-02-10       Impact factor: 5.349

6.  Module identification in bipartite and directed networks.

Authors:  Roger Guimerà; Marta Sales-Pardo; Luís A Nunes Amaral
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2007-09-06

7.  Molecular basis for evolving modularity in the yeast protein interaction network.

Authors:  Ariel Fernández
Journal:  PLoS Comput Biol       Date:  2007-11       Impact factor: 4.475

8.  Taxonomies of networks from community structure.

Authors:  Jukka-Pekka Onnela; Daniel J Fenn; Stephen Reid; Mason A Porter; Peter J Mucha; Mark D Fricker; Nick S Jones
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2012-09-10

Review 9.  Understanding brain networks and brain organization.

Authors:  Luiz Pessoa
Journal:  Phys Life Rev       Date:  2014-04-18       Impact factor: 11.025

10.  The Underlying Ecological Processes of Gut Microbiota Among Cohabitating Retarded, Overgrown and Normal Shrimp.

Authors:  Jinbo Xiong; Wenfang Dai; Jinyong Zhu; Keshao Liu; Chunming Dong; Qiongfen Qiu
Journal:  Microb Ecol       Date:  2016-12-13       Impact factor: 4.552

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