Literature DB >> 18582473

Exploring the limits of sequence and structure in a variant betagamma-crystallin domain of the protein absent in melanoma-1 (AIM1).

Penmatsa Aravind1, Graeme Wistow, Yogendra Sharma, Rajan Sankaranarayanan.   

Abstract

Betagamma-crystallins belong to a superfamily of proteins in prokaryotes and eukaryotes that are based on duplications of a characteristic, highly conserved Greek key motif. Most members of the superfamily in vertebrates are structural proteins of the eye lens that contain four motifs arranged as two structural domains. Absent in melanoma 1 (AIM1), an unusual member of the superfamily whose expression is associated with suppression of malignancy in melanoma, contains 12 betagamma-crystallin motifs in six domains. Some of these motifs diverge considerably from the canonical motif sequence. AIM1g1, the first betagamma-crystallin domain of AIM1, is the most variant of betagamma-crystallin domains currently known. In order to understand the limits of sequence variation on the structure, we report the crystal structure of AIM1g1 at 1.9 A resolution. Despite having changes in key residues, the domain retains the overall betagamma-crystallin fold. The domain also contains an unusual extended surface loop that significantly alters the shape of the domain and its charge profile. This structure illustrates the resilience of the betagamma fold to considerable sequence changes and its remarkable ability to adapt for novel functions.

Entities:  

Mesh:

Substances:

Year:  2008        PMID: 18582473      PMCID: PMC2577918          DOI: 10.1016/j.jmb.2008.06.019

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  33 in total

1.  Conservation of folding and stability within a protein family: the tyrosine corner as an evolutionary cul-de-sac.

Authors:  S J Hamill; E Cota; C Chothia; J Clarke
Journal:  J Mol Biol       Date:  2000-01-21       Impact factor: 5.469

2.  Heat capacity of hydrogen-bonded networks: an alternative view of protein folding thermodynamics.

Authors:  A Cooper
Journal:  Biophys Chem       Date:  2000-05-31       Impact factor: 2.352

Review 3.  Lens crystallins and their microbial homologs: structure, stability, and function.

Authors:  R Jaenicke; C Slingsby
Journal:  Crit Rev Biochem Mol Biol       Date:  2001       Impact factor: 8.250

Review 4.  Fold change in evolution of protein structures.

Authors:  N V Grishin
Journal:  J Struct Biol       Date:  2001 May-Jun       Impact factor: 2.867

Review 5.  Protein stability in extremophilic archaea.

Authors:  R Scandurra; V Consalvi; R Chiaraluce; L Politi; P C Engel
Journal:  Front Biosci       Date:  2000-09-01

6.  DaliLite workbench for protein structure comparison.

Authors:  L Holm; J Park
Journal:  Bioinformatics       Date:  2000-06       Impact factor: 6.937

7.  The N-terminal domain of betaB2-crystallin resembles the putative ancestral homodimer.

Authors:  N J Clout; A Basak; K Wieligmann; O A Bateman; R Jaenicke; C Slingsby
Journal:  J Mol Biol       Date:  2000-12-01       Impact factor: 5.469

8.  Evidence for a strong sulfur-aromatic interaction derived from crystallographic data.

Authors:  R J Zauhar; C L Colbert; R S Morgan; W J Welsh
Journal:  Biopolymers       Date:  2000-03       Impact factor: 2.505

9.  NMR structure of Streptomyces killer toxin-like protein, SKLP: further evidence for the wide distribution of single-domain betagamma-crystallin superfamily proteins.

Authors:  S Y Ohki; E Kariya; K Hiraga; A Wakamiya; T Isobe; K Oda; M Kainosho
Journal:  J Mol Biol       Date:  2001-01-05       Impact factor: 5.469

10.  Calcium-binding to lens betaB2- and betaA3-crystallins suggests that all beta-crystallins are calcium-binding proteins.

Authors:  Maroor K Jobby; Yogendra Sharma
Journal:  FEBS J       Date:  2007-07-25       Impact factor: 5.542

View more
  12 in total

Review 1.  Ca2+-binding motif of βγ-crystallins.

Authors:  Shanti Swaroop Srivastava; Amita Mishra; Bal Krishnan; Yogendra Sharma
Journal:  J Biol Chem       Date:  2014-02-24       Impact factor: 5.157

Review 2.  Evolution of crystallins for a role in the vertebrate eye lens.

Authors:  Christine Slingsby; Graeme J Wistow; Alice R Clark
Journal:  Protein Sci       Date:  2013-02-26       Impact factor: 6.725

Review 3.  Liquid Biopsies for Assessing Metastatic Melanoma Progression.

Authors:  Kelly Huynh; Dave S B Hoon
Journal:  Crit Rev Oncog       Date:  2016

4.  The molecular refractive function of lens γ-Crystallins.

Authors:  Huaying Zhao; Patrick H Brown; M Teresa Magone; Peter Schuck
Journal:  J Mol Biol       Date:  2011-06-12       Impact factor: 5.469

5.  Solution properties of γ-crystallins: compact structure and low frictional ratio are conserved properties of diverse γ-crystallins.

Authors:  Yingwei Chen; Huaying Zhao; Peter Schuck; Graeme Wistow
Journal:  Protein Sci       Date:  2013-11-28       Impact factor: 6.725

6.  Explosive expansion of betagamma-crystallin genes in the ancestral vertebrate.

Authors:  Guido Kappé; Andrew G Purkiss; Siebe T van Genesen; Christine Slingsby; Nicolette H Lubsen
Journal:  J Mol Evol       Date:  2010-08-20       Impact factor: 2.395

7.  Single-molecule Force Spectroscopy Reveals the Calcium Dependence of the Alternative Conformations in the Native State of a βγ-Crystallin Protein.

Authors:  Zackary N Scholl; Qing Li; Weitao Yang; Piotr E Marszalek
Journal:  J Biol Chem       Date:  2016-07-04       Impact factor: 5.157

8.  AIM1 and LINE-1 epigenetic aberrations in tumor and serum relate to melanoma progression and disease outcome.

Authors:  Sojun Hoshimoto; Christine T Kuo; Kelly K Chong; Teh-Ling Takeshima; Yoshiki Takei; Michelle W Li; Sharon K Huang; Myung-Shin Sim; Donald L Morton; Dave S B Hoon
Journal:  J Invest Dermatol       Date:  2012-03-08       Impact factor: 8.551

9.  Mechanism of the very efficient quenching of tryptophan fluorescence in human gamma D- and gamma S-crystallins: the gamma-crystallin fold may have evolved to protect tryptophan residues from ultraviolet photodamage.

Authors:  Jiejin Chen; Patrik R Callis; Jonathan King
Journal:  Biochemistry       Date:  2009-05-05       Impact factor: 3.162

Review 10.  The human crystallin gene families.

Authors:  Graeme Wistow
Journal:  Hum Genomics       Date:  2012-12-01       Impact factor: 4.639

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.