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Literature DB >> 10980157

DaliLite workbench for protein structure comparison.

L Holm¹, J Park.
1. holm@embl-ebi.ac.uk

Abstract

SUMMARY: DaliLite is a program for pairwise structure comparison and for structure database searching. It is a standalone version of the search engine of the popular Dali server. A web interface is provided to view the results, multiple alignments and 3D superimpositions of structures.

Mesh：

Substances：
Proteins

Year: 2000 PMID： 10980157 DOI： 10.1093/bioinformatics/16.6.566

Source DB: PubMed Journal: Bioinformatics ISSN： 1367-4803 Impact factor: 6.937

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Cited

428 in total

1. MAMMOTH (matching molecular models obtained from theory): an automated method for model comparison.

Authors: Angel R Ortiz; Charlie E M Strauss; Osvaldo Olmea
Journal: Protein Sci Date: 2002-11 Impact factor: 6.725

2. Structural insights into Ail-mediated adhesion in Yersinia pestis.

Authors: Satoshi Yamashita; Petra Lukacik; Travis J Barnard; Nicholas Noinaj; Suleyman Felek; Tiffany M Tsang; Eric S Krukonis; B Joseph Hinnebusch; Susan K Buchanan
Journal: Structure Date: 2011-11-09 Impact factor: 5.006

3. The primary diterpene synthase products of Picea abies levopimaradiene/abietadiene synthase (PaLAS) are epimers of a thermally unstable diterpenol.

Authors: Christopher I Keeling; Lina L Madilao; Philipp Zerbe; Harpreet K Dullat; Jörg Bohlmann
Journal: J Biol Chem Date: 2011-04-25 Impact factor: 5.157

4. Structural classification of zinc fingers: survey and summary.

Authors: S Sri Krishna; Indraneel Majumdar; Nick V Grishin
Journal: Nucleic Acids Res Date: 2003-01-15 Impact factor: 16.971

5. ASTRO-FOLD: a combinatorial and global optimization framework for Ab initio prediction of three-dimensional structures of proteins from the amino acid sequence.

Authors: J L Klepeis; C A Floudas
Journal: Biophys J Date: 2003-10 Impact factor: 4.033

DaliLite workbench for protein structure comparison.

1. MAMMOTH (matching molecular models obtained from theory): an automated method for model comparison.

2. Structural insights into Ail-mediated adhesion in Yersinia pestis.

3. The primary diterpene synthase products of Picea abies levopimaradiene/abietadiene synthase (PaLAS) are epimers of a thermally unstable diterpenol.

4. Structural classification of zinc fingers: survey and summary.

5. ASTRO-FOLD: a combinatorial and global optimization framework for Ab initio prediction of three-dimensional structures of proteins from the amino acid sequence.

6. Sensitivity and selectivity in protein structure comparison.

7. Conserved characteristics of the rhabdovirus nucleoprotein.

8. Distorted octahedral coordination of tungstate in a subfamily of specific binding proteins.

9. Identification of DNA-binding proteins using structural, electrostatic and evolutionary features.

10. Autotransporter structure reveals intra-barrel cleavage followed by conformational changes.