| Literature DB >> 18577209 |
Brian Kornblit1, Lea Munthe-Fog, Hans O Madsen, Jens Strøm, Lars Vindeløv, Peter Garred.
Abstract
INTRODUCTION: High mobility group box 1 protein (HMGB1) is a pleiotropic cytokine, recently implicated in the pathophysiology of the systemic inflammatory response syndrome (SIRS) and sepsis. Data from experimental sepsis models show that administration of anti-HMGB1 antibodies significantly decreased mortality, even when administration was delayed for 24 hours, providing a window of opportunity for therapeutic intervention if transferred into a clinical setting. Whether genetic variation in the human HMGB1 gene is associated with disease susceptibility is unknown.Entities:
Mesh:
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Year: 2008 PMID: 18577209 PMCID: PMC2481482 DOI: 10.1186/cc6935
Source DB: PubMed Journal: Crit Care ISSN: 1364-8535 Impact factor: 9.097
PCR and pyrosequencing primers
| Genetic variant | PCR | Pyrosequencing primer | ||
| Primer set | Forward primer | Reverse primer | ||
| Sequencing | ||||
| -1615A>G | A | 5'-ATG TGC ATG TGT GAT ATA TTG TCC-3' | 5'-GTT ATA TCA GTG CTT TAT GAA ACT AC-3' | |
| -1377delA | ||||
| 1747delT | B | 5'-CAA AGT TTT ATG CAA GGA GGG TG-3' | 5'-GTC CAT TCA GGG CGA TCT C-3' | |
| 1779T>G | ||||
| 1808C>G | ||||
| 1822G>A | ||||
| 1888insT | ||||
| 4519_4521delGAT | C | 5'-AAA GTT CTG CCA TGT TCT ATT TC-3' | 5'-CAG GAC AGG GCT ATC TAA AG-3' | |
| 2351insT | ||||
| Pyrosequencing | ||||
| -196C>A | 5'-CTC TTT GCC CGG CAT ACA CA-3' | 5'-TCC TGA CCA GAG CCC GTT T-3' | 5'-TTG ATG ACG TGT CCC-3' | |
| 3814C>G | 5'-GTC TGA TTT TAC GGA GGT TGA-3' | 5'-CCT TTG CCC ATG TTT AGT TAT T-3' | 5'-TAC TTT GGT TTT CAT TCC-3' | |
| 982C>T | 5'-TGT TCA TCT AGG GTT CTA GCT-3' | 5'-CCT TTG ATT TTT GGG CGA TAC-3' | 5'-TTA GTT CGG CCT TCT T-3' | |
| 1177G>C | 5'-AAC TGG GAG AGA TGT GGA ATA-3' | 5'-CAA TCA TAC ATC TGG CGT ACT-3' | 5'-GGT TTG CTT GGT AAA ATG-3' | |
Forward primers from primer sets A, B and C contain a 5'-T7 sequence (5'-TAA TAC GAC TCA CTA TAG GG-3'). The 5' ends of all of the PCR reverse primers used for pyrosequencing are biotinylated.
Distribution of genotypes
| Polymorphism | rs number | Control population | SIRS population | ||||
| -1615A>G | 1412125 | A/A | A/G | G/G | A/A | A/G | G/G |
| 24.0 | 47.0 | 29.0 | 24.0 | 48.0 | 28.0 | ||
| -1377delA | 41369348 | A/A | A/- | -/- | A/A | A/- | -/- |
| 87.0 | 13.0 | 0.0 | 89.5 | 10.0 | 0.5 | ||
| 1747delT | 55946320 | T/T | T/- | -/- | T/T | T/- | -/- |
| 96.0 | 4.0 | 0.0 | 97.0 | 3.0 | 0.0 | ||
| 1888insT | 41497949 | -/- | -/T | T/T | -/- | -/T | T/T |
| 99.0 | 1.0 | 0.0 | 99.0 | 1.0 | 0.0 | ||
| 3814C>G | 2249825 | C/C | C/G | G/G | C/C | C/G | G/G |
| 47.0 | 47.0 | 6.0 | 53.0 | 41.0 | 6.0 | ||
| 982C>T | 1060348 | C/C | C/T | T/T | C/C | C/T | T/T |
| 92.0 | 8.0 | 0.0 | 95.0 | 5.0 | 0.0 | ||
| 1177G>C | 3742305 | G/G | G/C | C/C | G/G | G/C | C/C |
| 47.0 | 46.0 | 7.0 | 53.0 | 41.0 | 6.0 | ||
| 2351insT | 41376448 | -/- | -/T | T/T | -/- | -/T | T/T |
| 50.0 | 45.0 | 5.0 | 57.0 | 38.0 | 5.0 | ||
Observed frequencies (%) of polymorphisms in 103 healthy Danish Caucasian control individuals and in 239 systemic inflammatory response syndrome (SIRS) patients (P > 0.05). rs number, reference single nucleotide polymorphism number.
Figure 1Schematic illustration of the high mobility group box 1 protein gene locus. The most common inferred haplotypes (frequency > 3%) in both the control population and the systemic inflammatory response syndrome (SIRS) population are shown. Modified from Ferrari and colleagues [41]. Bold, location of polymorphisms; italic, location of mutations; underline, mutations only found in the control population; solid boxes, exons I to V. *Haplotype was statistically more frequent in the SIRS population (P = 0.006) as compared with the control population.
Pairwise linkage disequilibrium (expressed by D' Lewontin's coefficient/squared correlation coefficient R2) between polymorphisms
| -1615A>G | -1377delA | 1747delT | 1888insT | 3814C>G | 982C>T | 1177G>C | |
| -1377delA | 1/0.062 | ||||||
| 1747delA | 1/0.0137 | 0.0658/0.0010 | |||||
| 1888insT | 1/0.00453 | 0.4401/0.0141 | -1/0.00005 | ||||
| 3814C>G | -0.7193/0.1736 | -1/0.0208 | -1/0.0046 | -0.1868/0.00005 | |||
| 982C>T | -1/0.0239 | -1/0.00148 | -1/0.000327 | -1/0.0001 | -0.7274/0.00493 | ||
| 1177G>C | -0.7234/0.1775 | -1/0.021 | -1/0.00465 | -0.2114/0.00007 | 1/0.9894 | -0.2228/0.00047 | |
| 2351insT | -0.6433/0.1202 | -1/0.018 | -1/0.00398 | 0.0443/0.00003 | 0.9503/0.7816 | 0.0462/0.00018 | 0.9626/0.7935 |
Patient baseline characteristics and mortality according to admission status
| Variable | SIRS without infection group | Sepsis group | Severe sepsis group | Septic shock group |
| Number of patients (%) | 63 (26.4%) | 24 (10.0%) | 87 (36.4%) | 65 (27.2%) |
| Age (years) | 58.5 ± 18.2 | 54.8 ± 15.4 | 63.1 ± 14.9 | 64.1 ± 15.1 |
| Type of admission | ||||
| Acute surgery | 33 (13.8) | 11 (4.6) | 32 (13.4) | 26 (10.9) |
| Elective surgery | 4 (1.7) | 1 (0.4) | 2 (0.8) | 0 (0) |
| Medical | 26 (10.9) | 12 (5.0) | 53 (22.2) | 39 (16.3) |
| Chronic disease | ||||
| Metastatic cancer | 0 | 0 | 0 | 1 |
| Hematological malignancy | 1 | 0 | 2 | 0 |
| SAPS II scorea | 32.7 ± 15.8 | 23.4 ± 8.4 | 40.4 ± 12.1 | 45.7 ± 14.4 |
| PaO2/FiO2 ratioa | 183 ± 93 | 351 ± 53 | 152 ± 89 | 137 ± 82 |
| Serum HMGB1 (ng/μl) | 0.94 ± 1.81 | 1.49 ± 3.15 | 1.38 ± 2.73 | 1.79 ± 4.00 |
| Number of SIRS criteriaa | ||||
| 2 | 31 (13.0) | 8 (3.3) | 17 (7.1) | 5 (2.1) |
| 3 | 20 (8.4) | 8 (3.3) | 31 (13.0) | 19 (7.9) |
| 4 | 12 (5.0) | 8 (3.3) | 39 (16.3) | 41 (17.2) |
| Overall survival (%) | ||||
| Day 28 | 87 | 88 | 62 | 65 |
| Follow-up time | 52 | 71 | 25 | 41 |
Data presented as n (%), mean ± standard deviation or percentage. aComparison of systemic inflammatory response syndrome (SIRS) without infection versus sepsis, severe sepsis and shock, and comparison of sepsis versus severe sepsis versus septic shock, P < 0.01. HMGB1, high mobility group box 1 protein; PaO2/FiO2 = ratio between partial pressure of oxygen and fraction of inspired oxygen; SAPS II, Simplified Acute Physiology Score II.
Figure 2Influence of HMGB1 genotype on survival. (a) Overall survival during the follow-up period according to the -1377delA genotype. (b) 28-day survival according to the 982C>T genotype.
Cox regression survival models
| Hazard ratio | 95% confidence interval | ||
| Restricted model | |||
| -1377delA genotype | 1.80 | 1.13 to 2.87 | 0.01 |
| Expanded model | |||
| -1377delA genotype | 1.84 | 1.14 to 2.96 | 0.028 |
| Age | 1.04 | 1.03 to 1.05 | < 0.001 |
| Number of SIRS criteria | 1.42 | 1.13 to 1.80 | 0.003 |
SIRS, systemic inflammatory response syndrome.
Classification of serum HMGB1, number of SIRS criteria, SAPS II score and PaO2/FiO2 ratio according to the HMGB1 982C>T and -1377delA genotypes
| Variable | 982C>T genotype | -1377delA genotype | ||
| C/C | C/T | A/A | A/- or -/- | |
| Serum HMGB1 (ng/μl) | 1.45 ± 3.05 | 0.28 ± 0.96* | 1.36 ± 2.78 | 1.61 ± 4.43 |
| Number of SIRS criteria | 3.13 ± 0.81 | 3.83 ± 0.39* | 3.21 ± 0.80 | 2.76 ± 0.78* |
| SAPS II | 37.8 ± 15.2 | 43.9 ± 12.3 | 38.2 ± 15.3 | 36.8 ± 13.8 |
| PaO2/FiO2 ratio | 164 ± 94 | 89 ± 38* | 158 ± 96 | 182 ± 63 |
Data presented as mean ± standard deviation. *P = 0.01. HMGB1, high mobility group box 1 protein; PaO2/FiO2 = ratio between partial pressure of oxygen and fraction of inspired oxygen; SAPS II, Simplified Acute Physiology score II; SIRS, systemic inflammatory response syndrome.