Literature DB >> 18574856

Three-dimensional water diffusion in impermeable cylindrical tubes: theory versus experiments.

Liat Avram1, Evren Ozarslan, Yaniv Assaf, Amnon Bar-Shir, Yoram Cohen, Peter J Basser.   

Abstract

Characterizing diffusion of gases and liquids within pores is important in understanding numerous transport processes and affects a wide range of practical applications. Previous measurements of the pulsed gradient stimulated echo (PGSTE) signal attenuation, E(q), of water within nerves and impermeable cylindrical microcapillary tubes showed it to be exquisitely sensitive to the orientation of the applied wave vector, q, with respect to the tube axis in the high-q regime. Here, we provide a simple three-dimensional model to explain this angular dependence by decomposing the average propagator, which describes the net displacement of water molecules, into components parallel and perpendicular to the tube wall, in which axial diffusion is free and radial diffusion is restricted. The model faithfully predicts the experimental data, not only the observed diffraction peaks in E(q) when the diffusion gradients are approximately normal to the tube wall, but their sudden disappearance when the gradient orientation possesses a small axial component. The model also successfully predicts the dependence of E(q) on gradient pulse duration and on gradient strength as well as tube inner diameter. To account for the deviation from the narrow pulse approximation in the PGSTE sequence, we use Callaghan's matrix operator framework, which this study validates experimentally for the first time. We also show how to combine average propagators derived for classical one-dimensional and two-dimensional models of restricted diffusion (e.g. between plates, within cylinders) to construct composite three-dimensional models of diffusion in complex media containing pores (e.g. rectangular prisms and/or capped cylinders) having a distribution of orientations, sizes, and aspect ratios. This three-dimensional modeling framework should aid in describing diffusion in numerous biological systems and in a myriad of materials sciences applications. Copyright (c) 2008 John Wiley & Sons, Ltd.

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Year:  2008        PMID: 18574856      PMCID: PMC7477620          DOI: 10.1002/nbm.1277

Source DB:  PubMed          Journal:  NMR Biomed        ISSN: 0952-3480            Impact factor:   4.044


  31 in total

1.  Probing porous media with gas diffusion NMR.

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Review 2.  Ordered porous materials for emerging applications.

Authors:  Mark E Davis
Journal:  Nature       Date:  2002-06-20       Impact factor: 49.962

3.  Dependence on diffusion time of apparent diffusion tensor of ex vivo calf tongue and heart.

Authors:  Sungheon Kim; Gloria Chi-Fishman; Alan S Barnett; Carlo Pierpaoli
Journal:  Magn Reson Med       Date:  2005-12       Impact factor: 4.668

4.  High b-value q-space analyzed diffusion-weighted MRI: application to multiple sclerosis.

Authors:  Y Assaf; D Ben-Bashat; J Chapman; S Peled; I E Biton; M Kafri; Y Segev; T Hendler; A D Korczyn; M Graif; Y Cohen
Journal:  Magn Reson Med       Date:  2002-01       Impact factor: 4.668

5.  A simple matrix formalism for spin echo analysis of restricted diffusion under generalized gradient waveforms

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Journal:  J Magn Reson       Date:  1997-11       Impact factor: 2.229

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Authors:  J E Tanner
Journal:  Biophys J       Date:  1979-10       Impact factor: 4.033

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Authors:  P N Sen; L M Schwartz; P P Mitra
Journal:  Magn Reson Imaging       Date:  1994       Impact factor: 2.546

8.  MR diffusion - "diffraction" phenomenon in multi-pulse-field-gradient experiments.

Authors:  Evren Ozarslan; Peter J Basser
Journal:  J Magn Reson       Date:  2007-08-09       Impact factor: 2.229

9.  Evaluation of restricted diffusion in cylinders. Phosphocreatine in rabbit leg muscle.

Authors:  P van Gelderen; D DesPres; P C van Zijl; C T Moonen
Journal:  J Magn Reson B       Date:  1994-03

10.  q-Space imaging of the brain.

Authors:  M D King; J Houseman; S A Roussel; N van Bruggen; S R Williams; D G Gadian
Journal:  Magn Reson Med       Date:  1994-12       Impact factor: 4.668

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  12 in total

1.  Noninvasive bipolar double-pulsed-field-gradient NMR reveals signatures for pore size and shape in polydisperse, randomly oriented, inhomogeneous porous media.

Authors:  Noam Shemesh; Evren Ozarslan; Tal Adiri; Peter J Basser; Yoram Cohen
Journal:  J Chem Phys       Date:  2010-07-28       Impact factor: 3.488

2.  Diffusion tensor of water in model articular cartilage.

Authors:  Konstantin I Momot
Journal:  Eur Biophys J       Date:  2010-10-23       Impact factor: 1.733

3.  Erythrocyte orientational and cell volume effects on NMR q-space analysis: simulations of restricted diffusion.

Authors:  Timothy J Larkin; Philip W Kuchel
Journal:  Eur Biophys J       Date:  2009-04-28       Impact factor: 1.733

4.  Ensemble average propagator-based detection of microstructural alterations after stroke.

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Journal:  Int J Comput Assist Radiol Surg       Date:  2016-07-01       Impact factor: 2.924

5.  NMR characterization of general compartment size distributions.

Authors:  Evren Ozarslan; Noam Shemesh; Cheng Guan Koay; Yoram Cohen; Peter J Basser
Journal:  New J Phys       Date:  2011-01       Impact factor: 3.729

6.  Pore diameter mapping using double pulsed-field gradient MRI and its validation using a novel glass capillary array phantom.

Authors:  Michal E Komlosh; Evren Özarslan; Martin J Lizak; Ferenc Horkay; Vincent Schram; Noam Shemesh; Yoram Cohen; Peter J Basser
Journal:  J Magn Reson       Date:  2010-10-26       Impact factor: 2.229

Review 7.  From single-pulsed field gradient to double-pulsed field gradient MR: gleaning new microstructural information and developing new forms of contrast in MRI.

Authors:  Noam Shemesh; Evren Ozarslan; Michal E Komlosh; Peter J Basser; Yoram Cohen
Journal:  NMR Biomed       Date:  2010-08       Impact factor: 4.044

Review 8.  The role of tissue microstructure and water exchange in biophysical modelling of diffusion in white matter.

Authors:  Markus Nilsson; Danielle van Westen; Freddy Ståhlberg; Pia C Sundgren; Jimmy Lätt
Journal:  MAGMA       Date:  2013-02-27       Impact factor: 2.310

9.  Detecting diffusion-diffraction patterns in size distribution phantoms using double-pulsed field gradient NMR: Theory and experiments.

Authors:  Noam Shemesh; Evren Ozarslan; Peter J Basser; Yoram Cohen
Journal:  J Chem Phys       Date:  2010-01-21       Impact factor: 3.488

10.  Observation of restricted diffusion in the presence of a free diffusion compartment: single- and double-PFG experiments.

Authors:  Noam Shemesh; Evren Ozarslan; Amnon Bar-Shir; Peter J Basser; Yoram Cohen
Journal:  J Magn Reson       Date:  2009-07-09       Impact factor: 2.229

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