Literature DB >> 21709780

NMR characterization of general compartment size distributions.

Evren Ozarslan1, Noam Shemesh, Cheng Guan Koay, Yoram Cohen, Peter J Basser.   

Abstract

The influence of molecular diffusion on the nuclear magnetic resonance (NMR) signal can be exploited to estimate compartment size distributions in heterogeneous specimens. Theoretical relationships between the NMR signal intensity at long diffusion times and the moments of a general distribution of isolated pores with characteristic shapes (planar, cylindrical or spherical) are established. A numerical method based on expressing a general diffusion-attenuated NMR signal profile in a series of complete orthogonal basis functions is introduced and subsequently employed to estimate the moments of the compartment size distribution. The results on simulated and real data obtained from controlled water-filled microcapillaries demonstrate the power of the approach to create contrast based not only on the mean of the compartment size but also its variance. The technique can be employed to address a variety of problems such as characterizing distributions of droplet sizes in emulsions and of apparent axon diameters in nerve fascicles.

Entities:  

Year:  2011        PMID: 21709780      PMCID: PMC3120057          DOI: 10.1088/1367-2630/13/1/015010

Source DB:  PubMed          Journal:  New J Phys        ISSN: 1367-2630            Impact factor:   3.729


  13 in total

1.  Determining multiple length scales in rocks

Authors: 
Journal:  Nature       Date:  2000-07-13       Impact factor: 49.962

2.  Remarks on q-space MR propagator in partially restricted, axially-symmetric, and isotropic environments.

Authors:  Evren Ozarslan; Cheng Guan Koay; Peter J Basser
Journal:  Magn Reson Imaging       Date:  2009-03-09       Impact factor: 2.546

3.  A general framework to quantify the effect of restricted diffusion on the NMR signal with applications to double pulsed field gradient NMR experiments.

Authors:  Evren Ozarslan; Noam Shemesh; Peter J Basser
Journal:  J Chem Phys       Date:  2009-03-14       Impact factor: 3.488

4.  AxCaliber: a method for measuring axon diameter distribution from diffusion MRI.

Authors:  Yaniv Assaf; Tamar Blumenfeld-Katzir; Yossi Yovel; Peter J Basser
Journal:  Magn Reson Med       Date:  2008-06       Impact factor: 4.668

5.  Efficient and robust computation of PDF features from diffusion MR signal.

Authors:  Haz-Edine Assemlal; David Tschumperlé; Luc Brun
Journal:  Med Image Anal       Date:  2009-07-12       Impact factor: 8.545

6.  Approximating distributions from moments.

Authors: 
Journal:  Phys Rev A Gen Phys       Date:  1987-11-15

7.  Spin Echo Analysis of Restricted Diffusion under Generalized Gradient Waveforms: Planar, Cylindrical, and Spherical Pores with Wall Relaxivity.

Authors: 
Journal:  J Magn Reson       Date:  1999-04       Impact factor: 2.229

8.  Measurement of emulsion droplet sizes using PFG NMR and regularization methods.

Authors:  K G Hollingsworth; M L Johns
Journal:  J Colloid Interface Sci       Date:  2003-02-15       Impact factor: 8.128

9.  The effect of the diffusion time and pulse gradient duration ratio on the diffraction pattern and the structural information estimated from q-space diffusion MR: experiments and simulations.

Authors:  Amnon Bar-Shir; Liat Avram; Evren Ozarslan; Peter J Basser; Yoram Cohen
Journal:  J Magn Reson       Date:  2008-07-15       Impact factor: 2.229

10.  Detecting diffusion-diffraction patterns in size distribution phantoms using double-pulsed field gradient NMR: Theory and experiments.

Authors:  Noam Shemesh; Evren Ozarslan; Peter J Basser; Yoram Cohen
Journal:  J Chem Phys       Date:  2010-01-21       Impact factor: 3.488

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  8 in total

1.  Temporal scaling characteristics of diffusion as a new MRI contrast: findings in rat hippocampus.

Authors:  Evren Özarslan; Timothy M Shepherd; Cheng Guan Koay; Stephen J Blackband; Peter J Basser
Journal:  Neuroimage       Date:  2012-01-26       Impact factor: 6.556

2.  Precise Inference and Characterization of Structural Organization (PICASO) of tissue from molecular diffusion.

Authors:  Lipeng Ning; Evren Özarslan; Carl-Fredrik Westin; Yogesh Rathi
Journal:  Neuroimage       Date:  2016-10-14       Impact factor: 6.556

3.  Mean apparent propagator (MAP) MRI: a novel diffusion imaging method for mapping tissue microstructure.

Authors:  Evren Özarslan; Cheng Guan Koay; Timothy M Shepherd; Michal E Komlosh; M Okan İrfanoğlu; Carlo Pierpaoli; Peter J Basser
Journal:  Neuroimage       Date:  2013-04-13       Impact factor: 6.556

4.  White matter microstructure from nonparametric axon diameter distribution mapping.

Authors:  Dan Benjamini; Michal E Komlosh; Lynne A Holtzclaw; Uri Nevo; Peter J Basser
Journal:  Neuroimage       Date:  2016-04-26       Impact factor: 6.556

5.  Size Distribution Imaging by Non-Uniform Oscillating-Gradient Spin Echo (NOGSE) MRI.

Authors:  Noam Shemesh; Gonzalo A Álvarez; Lucio Frydman
Journal:  PLoS One       Date:  2015-07-21       Impact factor: 3.240

6.  Apparent exchange rate for breast cancer characterization.

Authors:  Samo Lasič; Stina Oredsson; Savannah C Partridge; Lao H Saal; Daniel Topgaard; Markus Nilsson; Karin Bryskhe
Journal:  NMR Biomed       Date:  2016-02-29       Impact factor: 4.044

7.  Orientationally-averaged diffusion-attenuated magnetic resonance signal for locally-anisotropic diffusion.

Authors:  Magnus Herberthson; Cem Yolcu; Hans Knutsson; Carl-Fredrik Westin; Evren Özarslan
Journal:  Sci Rep       Date:  2019-03-20       Impact factor: 4.379

Review 8.  The sensitivity of diffusion MRI to microstructural properties and experimental factors.

Authors:  Maryam Afzali; Tomasz Pieciak; Sharlene Newman; Eleftherios Garyfallidis; Evren Özarslan; Hu Cheng; Derek K Jones
Journal:  J Neurosci Methods       Date:  2020-10-02       Impact factor: 2.390

  8 in total

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