Literature DB >> 18565541

Modulation of T4 gene 32 protein DNA binding activity by the recombination mediator protein UvsY.

Kiran Pant1, Leila Shokri, Richard L Karpel, Scott W Morrical, Mark C Williams.   

Abstract

Bacteriophage T4 UvsY is a recombination mediator protein that promotes assembly of the UvsX-ssDNA presynaptic filament. UvsY helps UvsX to displace T4 gene 32 protein (gp32) from ssDNA, a reaction necessary for proper formation of the presynaptic filament. Here we use DNA stretching to examine UvsY interactions with single DNA molecules in the presence and absence of gp32 and a gp32 C-terminal truncation (*I), and show that in both cases UvsY is able to destabilize gp32-ssDNA interactions. In these experiments UvsY binds more strongly to dsDNA than ssDNA due to its inability to wrap ssDNA at high forces. To support this hypothesis, we show that ssDNA created by exposure of stretched DNA to glyoxal is strongly wrapped by UvsY, but wrapping occurs only at low forces. Our results demonstrate that UvsY interacts strongly with stretched DNA in the absence of other proteins. In the presence of gp32 and *I, UvsY is capable of strongly destabilizing gp32-DNA complexes in order to facilitate ssDNA wrapping, which in turn prepares the ssDNA for presynaptic filament assembly in the presence of UvsX. Thus, UvsY mediates UvsX binding to ssDNA by converting rigid gp32-DNA filaments into a structure that can be strongly bound by UvsX.

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Year:  2008        PMID: 18565541      PMCID: PMC2527458          DOI: 10.1016/j.jmb.2008.05.039

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  60 in total

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Authors:  J S Bleuit; H Xu; Y Ma; T Wang; J Liu; S W Morrical
Journal:  Proc Natl Acad Sci U S A       Date:  2001-07-17       Impact factor: 11.205

3.  Mechanical disruption of individual nucleosomes reveals a reversible multistage release of DNA.

Authors:  Brent D Brower-Toland; Corey L Smith; Richard C Yeh; John T Lis; Craig L Peterson; Michelle D Wang
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Review 4.  Thermodynamics of DNA interactions from single molecule stretching experiments.

Authors:  Mark C Williams; Ioulia Rouzina; Victor A Bloomfield
Journal:  Acc Chem Res       Date:  2002-03       Impact factor: 22.384

5.  Synergistic action of three recombination gene products of bacteriophage T4, uvsX, uvsY, and gene 32 proteins.

Authors:  T Yonesaki; T Minagawa
Journal:  J Biol Chem       Date:  1989-05-15       Impact factor: 5.157

6.  Two alternative mechanisms for initiation of DNA replication forks in bacteriophage T4: priming by RNA polymerase and by recombination.

Authors:  A Luder; G Mosig
Journal:  Proc Natl Acad Sci U S A       Date:  1982-02       Impact factor: 11.205

7.  Autoregulation of gene expression. Quantitative evaluation of the expression and function of the bacteriophage T4 gene 32 (single-stranded DNA binding) protein system.

Authors:  P H von Hippel; S C Kowalczykowski; N Lonberg; J W Newport; L S Paul; G D Stormo; L Gold
Journal:  J Mol Biol       Date:  1982-12-25       Impact factor: 5.469

8.  Domain effects on the DNA-interactive properties of bacteriophage T4 gene 32 protein.

Authors:  L A Waidner; E K Flynn; M Wu; X Li; R L Karpel
Journal:  J Biol Chem       Date:  2000-10-25       Impact factor: 5.157

9.  Limited proteolysis studies on the Escherichia coli single-stranded DNA binding protein. Evidence for a functionally homologous domain in both the Escherichia coli and T4 DNA binding proteins.

Authors:  K R Williams; E K Spicer; M B LoPresti; R A Guggenheimer; J W Chase
Journal:  J Biol Chem       Date:  1983-03-10       Impact factor: 5.157

10.  T4 phage gene uvsX product catalyzes homologous DNA pairing.

Authors:  T Yonesaki; T Minagawa
Journal:  EMBO J       Date:  1985-12-01       Impact factor: 11.598

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  11 in total

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Review 3.  Mediators of homologous DNA pairing.

Authors:  Alex Zelensky; Roland Kanaar; Claire Wyman
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Review 4.  Biophysical characterization of DNA binding from single molecule force measurements.

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6.  The Mei5-Sae3 protein complex mediates Dmc1 activity in Saccharomyces cerevisiae.

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Review 7.  Assembly and dynamics of the bacteriophage T4 homologous recombination machinery.

Authors:  Jie Liu; Scott W Morrical
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8.  Functional complementation of UvsX and UvsY mutations in the mediation of T4 homologous recombination.

Authors:  Joshua N Farb; Scott W Morrical
Journal:  Nucleic Acids Res       Date:  2009-02-25       Impact factor: 16.971

9.  Human Rad52 binds and wraps single-stranded DNA and mediates annealing via two hRad52-ssDNA complexes.

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10.  Bacteriophage T4 Escapes CRISPR Attack by Minihomology Recombination and Repair.

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