Literature DB >> 18563246

The incredible shrinking world of DNA microarrays.

Sarah J Wheelan1, Francisco Martínez Murillo, Jef D Boeke.   

Abstract

The efficacy of microarrays in examining gene expression, gene and genome structure, protein-DNA interactions, whole-genome similarities and differences, microRNA expression, methylation (and more) is no longer in question. It is a fast-developing, cutting edge technology that has grown up along with massive sequence databases and is likely to become part of everyday patient care. Many advances have recently expanded the power and utility of microarrays; among them is our development of a new array tiling technique that dramatically increases the scope of coverage of an oligonucleotide tiling array without substantially increasing its cost.

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Year:  2008        PMID: 18563246      PMCID: PMC2535915          DOI: 10.1039/b706237k

Source DB:  PubMed          Journal:  Mol Biosyst        ISSN: 1742-2051


  63 in total

1.  Sequence-matched probes produce increased cross-platform consistency and more reproducible biological results in microarray-based gene expression measurements.

Authors:  Brigham H Mecham; Gregory T Klus; Jeffrey Strovel; Meena Augustus; David Byrne; Peter Bozso; Daniel Z Wetmore; Thomas J Mariani; Isaac S Kohane; Zoltan Szallasi
Journal:  Nucleic Acids Res       Date:  2004-05-25       Impact factor: 16.971

Review 2.  Microarray data analysis: from disarray to consolidation and consensus.

Authors:  David B Allison; Xiangqin Cui; Grier P Page; Mahyar Sabripour
Journal:  Nat Rev Genet       Date:  2006-01       Impact factor: 53.242

Review 3.  Analyzing micro-RNA expression using microarrays.

Authors:  Timothy S Davison; Charles D Johnson; Bernard F Andruss
Journal:  Methods Enzymol       Date:  2006       Impact factor: 1.600

Review 4.  Illumina universal bead arrays.

Authors:  Jian-Bing Fan; Kevin L Gunderson; Marina Bibikova; Joanne M Yeakley; Jing Chen; Eliza Wickham Garcia; Lori L Lebruska; Marc Laurent; Richard Shen; David Barker
Journal:  Methods Enzymol       Date:  2006       Impact factor: 1.600

Review 5.  Gene expression omnibus: microarray data storage, submission, retrieval, and analysis.

Authors:  Tanya Barrett; Ron Edgar
Journal:  Methods Enzymol       Date:  2006       Impact factor: 1.600

6.  Compact, universal DNA microarrays to comprehensively determine transcription-factor binding site specificities.

Authors:  Michael F Berger; Anthony A Philippakis; Aaron M Qureshi; Fangxue S He; Preston W Estep; Martha L Bulyk
Journal:  Nat Biotechnol       Date:  2006-09-24       Impact factor: 54.908

7.  Yeast microarrays for genome wide parallel genetic and gene expression analysis.

Authors:  D A Lashkari; J L DeRisi; J H McCusker; A F Namath; C Gentile; S Y Hwang; P O Brown; R W Davis
Journal:  Proc Natl Acad Sci U S A       Date:  1997-11-25       Impact factor: 11.205

8.  An oligonucleotide hybridization approach to DNA sequencing.

Authors:  K R Khrapko; A A Khorlyn; V V Shick; V L Florentiev; A D Mirzabekov
Journal:  FEBS Lett       Date:  1989-10-09       Impact factor: 4.124

9.  Discrete small RNA-generating loci as master regulators of transposon activity in Drosophila.

Authors:  Julius Brennecke; Alexei A Aravin; Alexander Stark; Monica Dus; Manolis Kellis; Ravi Sachidanandam; Gregory J Hannon
Journal:  Cell       Date:  2007-03-08       Impact factor: 41.582

10.  A gene expression signature predicts survival of patients with stage I non-small cell lung cancer.

Authors:  Yan Lu; William Lemon; Peng-Yuan Liu; Yijun Yi; Carl Morrison; Ping Yang; Zhifu Sun; Janos Szoke; William L Gerald; Mark Watson; Ramaswamy Govindan; Ming You
Journal:  PLoS Med       Date:  2006-12       Impact factor: 11.069

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  9 in total

1.  Statistical expression deconvolution from mixed tissue samples.

Authors:  Jennifer Clarke; Pearl Seo; Bertrand Clarke
Journal:  Bioinformatics       Date:  2010-03-04       Impact factor: 6.937

2.  The Statistics and Mathematics of High Dimension Low Sample Size Asymptotics.

Authors:  Dan Shen; Haipeng Shen; Hongtu Zhu; J S Marron
Journal:  Stat Sin       Date:  2016-10       Impact factor: 1.261

3.  Network-based gene expression biomarkers for cold and heat patterns of rheumatoid arthritis in traditional chinese medicine.

Authors:  Cheng Lu; Xuyan Niu; Cheng Xiao; Gao Chen; Qinglin Zha; Hongtao Guo; Miao Jiang; Aiping Lu
Journal:  Evid Based Complement Alternat Med       Date:  2012-03-22       Impact factor: 2.629

4.  Collection of epithelial cells from rodent mammary gland via laser capture microdissection yielding high-quality RNA suitable for microarray analysis.

Authors:  John N McGinley; Zongjian Zhu; Weiqin Jiang; Henry J Thompson
Journal:  Biol Proced Online       Date:  2010-03-03       Impact factor: 3.244

5.  Importance of correlation between gene expression levels: application to the type I interferon signature in rheumatoid arthritis.

Authors:  Frédéric Reynier; Fabien Petit; Malick Paye; Fanny Turrel-Davin; Pierre-Emmanuel Imbert; Arnaud Hot; Bruno Mougin; Pierre Miossec
Journal:  PLoS One       Date:  2011-10-17       Impact factor: 3.240

Review 6.  Review on porcine endogenous retrovirus detection assays--impact on quality and safety of xenotransplants.

Authors:  Antonia W Godehardt; Michael Rodrigues Costa; Ralf R Tönjes
Journal:  Xenotransplantation       Date:  2015-01-31       Impact factor: 3.907

7.  SPP1 and AGER as potential prognostic biomarkers for lung adenocarcinoma.

Authors:  Weiguo Zhang; Junli Fan; Qiang Chen; Caipeng Lei; Bin Qiao; Qin Liu
Journal:  Oncol Lett       Date:  2018-03-12       Impact factor: 2.967

8.  PNME - A gene-gene parallel network module extraction method.

Authors:  Bikash Jaiswal; Kumar Utkarsh; D K Bhattacharyya
Journal:  J Genet Eng Biotechnol       Date:  2018-12-11

9.  Drop drying on surfaces determines chemical reactivity - the specific case of immobilization of oligonucleotides on microarrays.

Authors:  Jens Sobek; Catharine Aquino; Wilfried Weigel; Ralph Schlapbach
Journal:  BMC Biophys       Date:  2013-06-12       Impact factor: 4.778

  9 in total

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