Literature DB >> 18544530

Biosynthesis of 2-hydroxyethylphosphonate, an unexpected intermediate common to multiple phosphonate biosynthetic pathways.

Zengyi Shao1, Joshua A V Blodgett, Benjamin T Circello, Andrew C Eliot, Ryan Woodyer, Gongyong Li, Wilfred A van der Donk, William W Metcalf, Huimin Zhao.   

Abstract

Phosphonic acids encompass a common yet chemically diverse class of natural products that often possess potent biological activities. Here we report that, despite the significant structural differences among many of these compounds, their biosynthetic routes contain an unexpected common intermediate, 2-hydroxyethyl-phosphonate, which is synthesized from phosphonoacetaldehyde by a distinct family of metal-dependent alcohol dehydrogenases (ADHs). Although the sequence identity of the ADH family members is relatively low (34-37%), in vitro biochemical characterization of the homologs involved in biosynthesis of the antibiotics fosfomycin, phosphinothricin tripeptide, and dehydrophos (formerly A53868) unequivocally confirms their enzymatic activities. These unique ADHs have exquisite substrate specificity, unusual metal requirements, and an unprecedented monomeric quaternary structure. Further, sequence analysis shows that these ADHs form a monophyletic group along with additional family members encoded by putative phosphonate biosynthetic gene clusters. Thus, the reduction of phosphonoacetaldehyde to hydroxyethyl-phosphonate may represent a common step in the biosynthesis of many phosphonate natural products, a finding that lends insight into the evolution of phosphonate biosynthetic pathways and the chemical structures of new C-P containing secondary metabolites.

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Year:  2008        PMID: 18544530      PMCID: PMC2516978          DOI: 10.1074/jbc.M801788200

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  22 in total

1.  Decreased zinc affinity of amyotrophic lateral sclerosis-associated superoxide dismutase mutants leads to enhanced catalysis of tyrosine nitration by peroxynitrite.

Authors:  J P Crow; J B Sampson; Y Zhuang; J A Thompson; J S Beckman
Journal:  J Neurochem       Date:  1997-11       Impact factor: 5.372

2.  Molecular cloning, sequence analysis, and heterologous expression of the phosphinothricin tripeptide biosynthetic gene cluster from Streptomyces viridochromogenes DSM 40736.

Authors:  Joshua A V Blodgett; Jun Kai Zhang; William W Metcalf
Journal:  Antimicrob Agents Chemother       Date:  2005-01       Impact factor: 5.191

Review 3.  Bialaphos.

Authors:  C J Thompson; H Seto
Journal:  Biotechnology       Date:  1995

4.  Crystal structure of an iron-dependent group III dehydrogenase that interconverts L-lactaldehyde and L-1,2-propanediol in Escherichia coli.

Authors:  Cristina Montella; Lluis Bellsolell; Rosa Pérez-Luque; Josefa Badía; Laura Baldoma; Miquel Coll; Juan Aguilar
Journal:  J Bacteriol       Date:  2005-07       Impact factor: 3.490

Review 5.  Fosfomycin tromethamine: single-dose treatment of acute cystitis.

Authors:  G E Stein
Journal:  Int J Fertil Womens Med       Date:  1999 Mar-Apr

6.  Sequencing and analysis of genes involved in the biosynthesis of a vancomycin group antibiotic.

Authors:  A M van Wageningen; P N Kirkpatrick; D H Williams; B R Harris; J K Kershaw; N J Lennard; M Jones; S J Jones; P J Solenberg
Journal:  Chem Biol       Date:  1998-03

7.  Studies on the biosynthesis of bialaphos. Biochemical mechanism of C-P bond formation: discovery of phosphonopyruvate decarboxylase which catalyzes the formation of phosphonoacetaldehyde from phosphonopyruvate.

Authors:  H Nakashita; K Watanabe; O Hara; T Hidaka; H Seto
Journal:  J Antibiot (Tokyo)       Date:  1997-03       Impact factor: 2.649

Review 8.  Molecular characterization of microbial alcohol dehydrogenases.

Authors:  M F Reid; C A Fewson
Journal:  Crit Rev Microbiol       Date:  1994       Impact factor: 7.624

9.  Similarity of Escherichia coli propanediol oxidoreductase (fucO product) and an unusual alcohol dehydrogenase from Zymomonas mobilis and Saccharomyces cerevisiae.

Authors:  T Conway; L O Ingram
Journal:  J Bacteriol       Date:  1989-07       Impact factor: 3.490

10.  Genetic analysis of the phosphinothricin-tripeptide biosynthetic pathway of Streptomyces viridochromogenes Tü494.

Authors:  R Alijah; J Dorendorf; S Talay; A Pühler; W Wohlleben
Journal:  Appl Microbiol Biotechnol       Date:  1991-03       Impact factor: 4.813

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  23 in total

1.  Characterization and structure of DhpI, a phosphonate O-methyltransferase involved in dehydrophos biosynthesis.

Authors:  Jin-Hee Lee; Brian Bae; Michael Kuemin; Benjamin T Circello; William W Metcalf; Satish K Nair; Wilfred A van der Donk
Journal:  Proc Natl Acad Sci U S A       Date:  2010-09-27       Impact factor: 11.205

2.  Significant natural product biosynthetic potential of actinorhizal symbionts of the genus frankia, as revealed by comparative genomic and proteomic analyses.

Authors:  Daniel W Udwary; Erin A Gontang; Adam C Jones; Carla S Jones; Andrew W Schultz; Jaclyn M Winter; Jane Y Yang; Nicholas Beauchemin; Todd L Capson; Benjamin R Clark; Eduardo Esquenazi; Alessandra S Eustáquio; Kelle Freel; Lena Gerwick; William H Gerwick; David Gonzalez; Wei-Ting Liu; Karla L Malloy; Katherine N Maloney; Markus Nett; Joshawna K Nunnery; Kevin Penn; Alejandra Prieto-Davo; Thomas L Simmons; Sara Weitz; Micheal C Wilson; Louis S Tisa; Pieter C Dorrestein; Bradley S Moore
Journal:  Appl Environ Microbiol       Date:  2011-04-15       Impact factor: 4.792

Review 3.  Genomic basis for natural product biosynthetic diversity in the actinomycetes.

Authors:  Markus Nett; Haruo Ikeda; Bradley S Moore
Journal:  Nat Prod Rep       Date:  2009-09-01       Impact factor: 13.423

4.  Characterization of Two Late-Stage Enzymes Involved in Fosfomycin Biosynthesis in Pseudomonads.

Authors:  Philip Olivares; Emily C Ulrich; Jonathan R Chekan; Wilfred A van der Donk; Satish K Nair
Journal:  ACS Chem Biol       Date:  2016-12-27       Impact factor: 5.100

5.  Stereochemistry of Hydride Transfer by Group III Alcohol Dehydrogenases Involved in Phosphonate Biosynthesis.

Authors:  Spencer C Peck; Seung Young Kim; Bradley S Evans; Wilfred A van der Donk
Journal:  Medchemcomm       Date:  2012-08       Impact factor: 3.597

6.  Purification and characterization of phosphonoglycans from Glycomyces sp. strain NRRL B-16210 and Stackebrandtia nassauensis NRRL B-16338.

Authors:  Xiaomin Yu; Neil P J Price; Bradley S Evans; William W Metcalf
Journal:  J Bacteriol       Date:  2014-02-28       Impact factor: 3.490

7.  Diversity and abundance of phosphonate biosynthetic genes in nature.

Authors:  Xiaomin Yu; James R Doroghazi; Sarath C Janga; Jun Kai Zhang; Benjamin Circello; Benjamin M Griffin; David P Labeda; William W Metcalf
Journal:  Proc Natl Acad Sci U S A       Date:  2013-12-02       Impact factor: 11.205

8.  Structure and function of phosphonoacetaldehyde dehydrogenase: the missing link in phosphonoacetate formation.

Authors:  Vinayak Agarwal; Spencer C Peck; Jui-Hui Chen; Svetlana A Borisova; Jonathan R Chekan; Wilfred A van der Donk; Satish K Nair
Journal:  Chem Biol       Date:  2013-12-19

9.  Revisiting the biosynthesis of dehydrophos reveals a tRNA-dependent pathway.

Authors:  Despina J Bougioukou; Subha Mukherjee; Wilfred A van der Donk
Journal:  Proc Natl Acad Sci U S A       Date:  2013-06-17       Impact factor: 11.205

Review 10.  Phosphonate biosynthesis and catabolism: a treasure trove of unusual enzymology.

Authors:  Spencer C Peck; Wilfred A van der Donk
Journal:  Curr Opin Chem Biol       Date:  2013-07-17       Impact factor: 8.822

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