Literature DB >> 18544041

Peptide release on the ribosome: mechanism and implications for translational control.

Elaine M Youngman1, Megan E McDonald, Rachel Green.   

Abstract

Peptide release, the reaction that hydrolyzes a completed protein from the peptidyl-tRNA upon completion of translation, is catalyzed in the active site of the large subunit of the ribosome and requires a class I release factor protein. The ribosome and release factor protein cooperate to accomplish two tasks: recognition of the stop codon and catalysis of peptidyl-tRNA hydrolysis. Although many fundamental questions remain, substantial progress has been made in the past several years. This review summarizes those advances and presents current models for the mechanisms of stop codon specificity and catalysis of peptide release. Finally, we discuss how these views fit into a larger emerging theme in the translation field: the importance of induced fit and conformational changes for progression through the translation cycle.

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Year:  2008        PMID: 18544041     DOI: 10.1146/annurev.micro.61.080706.093323

Source DB:  PubMed          Journal:  Annu Rev Microbiol        ISSN: 0066-4227            Impact factor:   15.500


  44 in total

1.  Kinetic basis for global loss of fidelity arising from mismatches in the P-site codon:anticodon helix.

Authors:  Hani S Zaher; Rachel Green
Journal:  RNA       Date:  2010-08-19       Impact factor: 4.942

2.  Bioinformatic, structural, and functional analyses support release factor-like MTRF1 as a protein able to decode nonstandard stop codons beginning with adenine in vertebrate mitochondria.

Authors:  David J Young; Christina D Edgar; Jennifer Murphy; Johannes Fredebohm; Elizabeth S Poole; Warren P Tate
Journal:  RNA       Date:  2010-04-26       Impact factor: 4.942

3.  The codon specificity of eubacterial release factors is determined by the sequence and size of the recognition loop.

Authors:  David J Young; Christina D Edgar; Elizabeth S Poole; Warren P Tate
Journal:  RNA       Date:  2010-06-28       Impact factor: 4.942

4.  Recognition of the amber UAG stop codon by release factor RF1.

Authors:  Andrei Korostelev; Jianyu Zhu; Haruichi Asahara; Harry F Noller
Journal:  EMBO J       Date:  2010-06-29       Impact factor: 11.598

5.  Evolution of molecular error rates and the consequences for evolvability.

Authors:  Etienne Rajon; Joanna Masel
Journal:  Proc Natl Acad Sci U S A       Date:  2011-01-03       Impact factor: 11.205

6.  23S rRNA nucleotides in the peptidyl transferase center are essential for tryptophanase operon induction.

Authors:  Rui Yang; Luis R Cruz-Vera; Charles Yanofsky
Journal:  J Bacteriol       Date:  2009-03-27       Impact factor: 3.490

7.  Nonsense suppression by near-cognate tRNAs employs alternative base pairing at codon positions 1 and 3.

Authors:  Bijoyita Roy; John D Leszyk; David A Mangus; Allan Jacobson
Journal:  Proc Natl Acad Sci U S A       Date:  2015-03-02       Impact factor: 11.205

8.  Molecular determinants of release factor 2 for ArfA-mediated ribosome rescue.

Authors:  Daisuke Kurita; Tatsuhiko Abo; Hyouta Himeno
Journal:  J Biol Chem       Date:  2020-07-28       Impact factor: 5.157

Review 9.  Fidelity at the molecular level: lessons from protein synthesis.

Authors:  Hani S Zaher; Rachel Green
Journal:  Cell       Date:  2009-02-20       Impact factor: 41.582

Review 10.  Ribosome-based quality control of mRNA and nascent peptides.

Authors:  Carrie L Simms; Erica N Thomas; Hani S Zaher
Journal:  Wiley Interdiscip Rev RNA       Date:  2016-05-18       Impact factor: 9.957

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