Literature DB >> 18536724

Asymmetric bidirectional replication at the human DBF4 origin.

Julia Romero1, Hoyun Lee.   

Abstract

Faithful replication of the entire genome once per cell cycle is essential for maintaining genetic integrity, and the origin of DNA replication is key in this regulation. Unlike that in unicellular organisms, the replication initiation mechanism in mammalian cells is not well understood. We have identified a strong origin of replication at the DBF4 promoter locus, which contains two initiation zones, two origin recognition complex (ORC) binding sites and two DNase I-hypersensitive regions within approximately 1.5 kb. Notably, similar to the Escherichia coli oriC, replication at the DBF4 locus starts from initiation zone I, which contains an ORC-binding site, and progresses in the direction of transcription toward initiation zone II, located approximately 0.4 kb downstream. Replication on the opposite strand from zone II, which contains another ORC-binding site, may be activated or facilitated by replication from zone I. We term this new mammalian replication mode 'asymmetric bidirectional replication'.

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Year:  2008        PMID: 18536724      PMCID: PMC2963641          DOI: 10.1038/nsmb.1439

Source DB:  PubMed          Journal:  Nat Struct Mol Biol        ISSN: 1545-9985            Impact factor:   15.369


  40 in total

1.  Start sites of bidirectional DNA synthesis at the human lamin B2 origin.

Authors:  G Abdurashidova; M Deganuto; R Klima; S Riva; G Biamonti; M Giacca; A Falaschi
Journal:  Science       Date:  2000-03-17       Impact factor: 47.728

Review 2.  Replication origins in metazoan chromosomes: fact or fiction?

Authors:  M L DePamphilis
Journal:  Bioessays       Date:  1999-01       Impact factor: 4.345

3.  Multiple sites of replication initiation in the human beta-globin gene locus.

Authors:  S Kamath; M Leffak
Journal:  Nucleic Acids Res       Date:  2001-02-01       Impact factor: 16.971

4.  Replication of mitochondrial DNA occurs by strand displacement with alternative light-strand origins, not via a strand-coupled mechanism.

Authors:  Timothy A Brown; Ciro Cecconi; Ariana N Tkachuk; Carlos Bustamante; David A Clayton
Journal:  Genes Dev       Date:  2005-10-15       Impact factor: 11.361

5.  Cdc7 is required throughout the yeast S phase to activate replication origins.

Authors:  A D Donaldson; W L Fangman; B J Brewer
Journal:  Genes Dev       Date:  1998-02-15       Impact factor: 11.361

6.  Initiation of DNA replication at CpG islands in mammalian chromosomes.

Authors:  S Delgado; M Gómez; A Bird; F Antequera
Journal:  EMBO J       Date:  1998-04-15       Impact factor: 11.598

7.  The forkhead transcription factor FoxI1 remains bound to condensed mitotic chromosomes and stably remodels chromatin structure.

Authors:  Jizhou Yan; Lisha Xu; Gregory Crawford; Zenfeng Wang; Shawn M Burgess
Journal:  Mol Cell Biol       Date:  2006-01       Impact factor: 4.272

8.  Mammalian Cdc7-Dbf4 protein kinase complex is essential for initiation of DNA replication.

Authors:  W Jiang; D McDonald; T J Hope; T Hunter
Journal:  EMBO J       Date:  1999-10-15       Impact factor: 11.598

9.  A novel growth- and cell cycle-regulated protein, ASK, activates human Cdc7-related kinase and is essential for G1/S transition in mammalian cells.

Authors:  H Kumagai; N Sato; M Yamada; D Mahony; W Seghezzi; E Lees; K Arai; H Masai
Journal:  Mol Cell Biol       Date:  1999-07       Impact factor: 4.272

10.  Stimulation of DNA replication in Saccharomyces cerevisiae by a glutamine- and proline-rich transcriptional activation domain.

Authors:  R Li
Journal:  J Biol Chem       Date:  1999-10-15       Impact factor: 5.157

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  16 in total

1.  Bubble-chip analysis of human origin distributions demonstrates on a genomic scale significant clustering into zones and significant association with transcription.

Authors:  Larry D Mesner; Veena Valsakumar; Neerja Karnani; Anindya Dutta; Joyce L Hamlin; Stefan Bekiranov
Journal:  Genome Res       Date:  2010-12-20       Impact factor: 9.043

2.  Why are we where we are? Understanding replication origins and initiation sites in eukaryotes using ChIP-approaches.

Authors:  Aloys Schepers; Peer Papior
Journal:  Chromosome Res       Date:  2010-01       Impact factor: 5.239

3.  Genome-scale analysis of metazoan replication origins reveals their organization in specific but flexible sites defined by conserved features.

Authors:  Christelle Cayrou; Philippe Coulombe; Alice Vigneron; Slavica Stanojcic; Olivier Ganier; Isabelle Peiffer; Eric Rivals; Aurore Puy; Sabine Laurent-Chabalier; Romain Desprat; Marcel Méchali
Journal:  Genome Res       Date:  2011-07-12       Impact factor: 9.043

4.  Cdk1-mediated phosphorylation of Cdc7 suppresses DNA re-replication.

Authors:  James Knockleby; Byung Ju Kim; Avani Mehta; Hoyun Lee
Journal:  Cell Cycle       Date:  2016-04-22       Impact factor: 4.534

5.  Dynamic regulation of histone H3K9 is linked to the switch between replication and transcription at the Dbf4 origin-promoter locus.

Authors:  Kathleen Kylie; Julia Romero; Indeewari K S Lindamulage; James Knockleby; Hoyun Lee
Journal:  Cell Cycle       Date:  2016-06-24       Impact factor: 4.534

Review 6.  Evaluating genome-scale approaches to eukaryotic DNA replication.

Authors:  David M Gilbert
Journal:  Nat Rev Genet       Date:  2010-09-01       Impact factor: 53.242

Review 7.  Strategic role of the ubiquitin-dependent segregase p97 (VCP or Cdc48) in DNA replication.

Authors:  Kristijan Ramadan; Swagata Halder; Katherine Wiseman; Bruno Vaz
Journal:  Chromosoma       Date:  2016-04-18       Impact factor: 4.316

Review 8.  The origin recognition complex: a biochemical and structural view.

Authors:  Huilin Li; Bruce Stillman
Journal:  Subcell Biochem       Date:  2012

9.  One-way PCR-based mapping of a replication initiation point (RIP).

Authors:  Julia Romero; Hoyun Lee
Journal:  Nat Protoc       Date:  2008       Impact factor: 13.491

10.  Back to the origin: reconsidering replication, transcription, epigenetics, and cell cycle control.

Authors:  Adam G Evertts; Hilary A Coller
Journal:  Genes Cancer       Date:  2012-11
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