Literature DB >> 31592214

Nonlinear Structural Vector Autoregressive Models with Application to Directed Brain Networks.

Yanning Shen1, Georgios B Giannakis2, Brian Baingana3.   

Abstract

Structural equation models (SEMs) and vector autoregressive models (VARMs) are two broad families of approaches that have been shown useful in effective brain connectivity studies. While VARMs postulate that a given region of interest in the brain is directionally connected to another one by virtue of time-lagged influences, SEMs assert that directed dependencies arise due to instantaneous effects, and may even be adopted when nodal measurements are not necessarily multivariate time series. To unify these complementary perspectives, linear structural vector autoregressive models (SVARMs) that leverage both instantaneous and time-lagged nodal data have recently been put forth. Albeit simple and tractable, linear SVARMs are quite limited since they are incapable of modeling nonlinear dependencies between neuronal time series. To this end, the overarching goal of the present paper is to considerably broaden the span of linear SVARMs by capturing nonlinearities through kernels, which have recently emerged as a powerful nonlinear modeling framework in canonical machine learning tasks, e.g., regression, classification, and dimensionality reduction. The merits of kernel-based methods are extended here to the task of learning the effective brain connectivity, and an efficient regularized estimator is put forth to leverage the edge sparsity inherent to real-world complex networks. Judicious kernel choice from a preselected dictionary of kernels is also addressed using a data-driven approach. Numerical tests on ECoG data captured through a study on epileptic seizures demonstrate that it is possible to unveil previously unknown directed links between brain regions of interest.

Entities:  

Keywords:  Network topology inference; nonlinear models; structural vector autoregressive models

Year:  2019        PMID: 31592214      PMCID: PMC6779157          DOI: 10.1109/TSP.2019.2940122

Source DB:  PubMed          Journal:  IEEE Trans Signal Process        ISSN: 1053-587X            Impact factor:   4.931


  15 in total

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2.  Investigating directed cortical interactions in time-resolved fMRI data using vector autoregressive modeling and Granger causality mapping.

Authors:  Rainer Goebel; Alard Roebroeck; Dae-Shik Kim; Elia Formisano
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3.  A comparison of methods for estimating quadratic effects in nonlinear structural equation models.

Authors:  Jeffrey R Harring; Brandi A Weiss; Jui-Chen Hsu
Journal:  Psychol Methods       Date:  2012-03-19

4.  Estimating brain functional connectivity with sparse multivariate autoregression.

Authors:  Pedro A Valdés-Sosa; Jose M Sánchez-Bornot; Agustín Lage-Castellanos; Mayrim Vega-Hernández; Jorge Bosch-Bayard; Lester Melie-García; Erick Canales-Rodríguez
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2005-05-29       Impact factor: 6.237

5.  Dynamic causal modelling.

Authors:  K J Friston; L Harrison; W Penny
Journal:  Neuroimage       Date:  2003-08       Impact factor: 6.556

6.  Kernel method for nonlinear granger causality.

Authors:  Daniele Marinazzo; Mario Pellicoro; Sebastiano Stramaglia
Journal:  Phys Rev Lett       Date:  2008-04-11       Impact factor: 9.161

7.  Complex network measures of brain connectivity: uses and interpretations.

Authors:  Mikail Rubinov; Olaf Sporns
Journal:  Neuroimage       Date:  2009-10-09       Impact factor: 6.556

8.  Modeling sparse connectivity between underlying brain sources for EEG/MEG.

Authors:  Stefan Haufe; Ryota Tomioka; Guido Nolte; Klaus-Robert Müller; Motoaki Kawanabe
Journal:  IEEE Trans Biomed Eng       Date:  2010-05-18       Impact factor: 4.538

9.  Emergent network topology at seizure onset in humans.

Authors:  Mark A Kramer; Eric D Kolaczyk; Heidi E Kirsch
Journal:  Epilepsy Res       Date:  2008-03-24       Impact factor: 3.045

10.  Inference of gene regulatory networks with sparse structural equation models exploiting genetic perturbations.

Authors:  Xiaodong Cai; Juan Andrés Bazerque; Georgios B Giannakis
Journal:  PLoS Comput Biol       Date:  2013-05-23       Impact factor: 4.475

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  1 in total

1.  Gradients of connectivity as graph Fourier bases of brain activity.

Authors:  Giulia Lioi; Vincent Gripon; Abdelbasset Brahim; François Rousseau; Nicolas Farrugia
Journal:  Netw Neurosci       Date:  2021-04-27
  1 in total

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