Literature DB >> 18513681

Monozygotic twins reveal germline contribution to allelic expression differences.

Vivian G Cheung1, Alan Bruzel, Joshua T Burdick, Michael Morley, James L Devlin, Richard S Spielman.   

Abstract

Variation in the level of gene expression is a major determinant of a cell's function and characteristics. Common allelic variants of genes can be expressed at different levels and thus contribute to phenotypic diversity. We have measured allelic expression differences at heterozygous loci in monozygotic twins and in unrelated individuals. We show that the extent of differential allelic expression is highly similar within monozygotic twin pairs for many loci, implying that allelic differences in gene expression are under genetic control. We also show that even subtle departures from equal allelic expression are often genetically determined.

Mesh:

Substances:

Year:  2008        PMID: 18513681      PMCID: PMC2427304          DOI: 10.1016/j.ajhg.2008.05.003

Source DB:  PubMed          Journal:  Am J Hum Genet        ISSN: 0002-9297            Impact factor:   11.025


  12 in total

1.  Allelic variation in human gene expression.

Authors:  Hai Yan; Weishi Yuan; Victor E Velculescu; Bert Vogelstein; Kenneth W Kinzler
Journal:  Science       Date:  2002-08-16       Impact factor: 47.728

2.  Allelic variation in gene expression is common in the human genome.

Authors:  H Shuen Lo; Zhining Wang; Ying Hu; Howard H Yang; Sheryl Gere; Kenneth H Buetow; Maxwell P Lee
Journal:  Genome Res       Date:  2003-08       Impact factor: 9.043

3.  Mapping determinants of human gene expression by regional and genome-wide association.

Authors:  Vivian G Cheung; Richard S Spielman; Kathryn G Ewens; Teresa M Weber; Michael Morley; Joshua T Burdick
Journal:  Nature       Date:  2005-10-27       Impact factor: 49.962

4.  Widespread monoallelic expression on human autosomes.

Authors:  Alexander Gimelbrant; John N Hutchinson; Benjamin R Thompson; Andrew Chess
Journal:  Science       Date:  2007-11-16       Impact factor: 47.728

5.  Genetic mapping of X-linked loci involved in skewing of X chromosome inactivation in the human.

Authors:  A K Naumova; L Olien; L M Bird; M Smith; A E Verner; M Leppert; K Morgan; C Sapienza
Journal:  Eur J Hum Genet       Date:  1998 Nov-Dec       Impact factor: 4.246

6.  A promoter mutation in the XIST gene in two unrelated families with skewed X-chromosome inactivation.

Authors:  R M Plenge; B D Hendrich; C Schwartz; J F Arena; A Naumova; C Sapienza; R M Winter; H F Willard
Journal:  Nat Genet       Date:  1997-11       Impact factor: 38.330

7.  Genetics of gene expression surveyed in maize, mouse and man.

Authors:  Eric E Schadt; Stephanie A Monks; Thomas A Drake; Aldons J Lusis; Nam Che; Veronica Colinayo; Thomas G Ruff; Stephen B Milligan; John R Lamb; Guy Cavet; Peter S Linsley; Mao Mao; Roland B Stoughton; Stephen H Friend
Journal:  Nature       Date:  2003-03-20       Impact factor: 49.962

8.  Genetic analysis of genome-wide variation in human gene expression.

Authors:  Michael Morley; Cliona M Molony; Teresa M Weber; James L Devlin; Kathryn G Ewens; Richard S Spielman; Vivian G Cheung
Journal:  Nature       Date:  2004-07-21       Impact factor: 49.962

9.  A second generation human haplotype map of over 3.1 million SNPs.

Authors:  Kelly A Frazer; Dennis G Ballinger; David R Cox; David A Hinds; Laura L Stuve; Richard A Gibbs; John W Belmont; Andrew Boudreau; Paul Hardenbol; Suzanne M Leal; Shiran Pasternak; David A Wheeler; Thomas D Willis; Fuli Yu; Huanming Yang; Changqing Zeng; Yang Gao; Haoran Hu; Weitao Hu; Chaohua Li; Wei Lin; Siqi Liu; Hao Pan; Xiaoli Tang; Jian Wang; Wei Wang; Jun Yu; Bo Zhang; Qingrun Zhang; Hongbin Zhao; Hui Zhao; Jun Zhou; Stacey B Gabriel; Rachel Barry; Brendan Blumenstiel; Amy Camargo; Matthew Defelice; Maura Faggart; Mary Goyette; Supriya Gupta; Jamie Moore; Huy Nguyen; Robert C Onofrio; Melissa Parkin; Jessica Roy; Erich Stahl; Ellen Winchester; Liuda Ziaugra; David Altshuler; Yan Shen; Zhijian Yao; Wei Huang; Xun Chu; Yungang He; Li Jin; Yangfan Liu; Yayun Shen; Weiwei Sun; Haifeng Wang; Yi Wang; Ying Wang; Xiaoyan Xiong; Liang Xu; Mary M Y Waye; Stephen K W Tsui; Hong Xue; J Tze-Fei Wong; Luana M Galver; Jian-Bing Fan; Kevin Gunderson; Sarah S Murray; Arnold R Oliphant; Mark S Chee; Alexandre Montpetit; Fanny Chagnon; Vincent Ferretti; Martin Leboeuf; Jean-François Olivier; Michael S Phillips; Stéphanie Roumy; Clémentine Sallée; Andrei Verner; Thomas J Hudson; Pui-Yan Kwok; Dongmei Cai; Daniel C Koboldt; Raymond D Miller; Ludmila Pawlikowska; Patricia Taillon-Miller; Ming Xiao; Lap-Chee Tsui; William Mak; You Qiang Song; Paul K H Tam; Yusuke Nakamura; Takahisa Kawaguchi; Takuya Kitamoto; Takashi Morizono; Atsushi Nagashima; Yozo Ohnishi; Akihiro Sekine; Toshihiro Tanaka; Tatsuhiko Tsunoda; Panos Deloukas; Christine P Bird; Marcos Delgado; Emmanouil T Dermitzakis; Rhian Gwilliam; Sarah Hunt; Jonathan Morrison; Don Powell; Barbara E Stranger; Pamela Whittaker; David R Bentley; Mark J Daly; Paul I W de Bakker; Jeff Barrett; Yves R Chretien; Julian Maller; Steve McCarroll; Nick Patterson; Itsik Pe'er; Alkes Price; Shaun Purcell; Daniel J Richter; Pardis Sabeti; Richa Saxena; Stephen F Schaffner; Pak C Sham; Patrick Varilly; David Altshuler; Lincoln D Stein; Lalitha Krishnan; Albert Vernon Smith; Marcela K Tello-Ruiz; Gudmundur A Thorisson; Aravinda Chakravarti; Peter E Chen; David J Cutler; Carl S Kashuk; Shin Lin; Gonçalo R Abecasis; Weihua Guan; Yun Li; Heather M Munro; Zhaohui Steve Qin; Daryl J Thomas; Gilean McVean; Adam Auton; Leonardo Bottolo; Niall Cardin; Susana Eyheramendy; Colin Freeman; Jonathan Marchini; Simon Myers; Chris Spencer; Matthew Stephens; Peter Donnelly; Lon R Cardon; Geraldine Clarke; David M Evans; Andrew P Morris; Bruce S Weir; Tatsuhiko Tsunoda; James C Mullikin; Stephen T Sherry; Michael Feolo; Andrew Skol; Houcan Zhang; Changqing Zeng; Hui Zhao; Ichiro Matsuda; Yoshimitsu Fukushima; Darryl R Macer; Eiko Suda; Charles N Rotimi; Clement A Adebamowo; Ike Ajayi; Toyin Aniagwu; Patricia A Marshall; Chibuzor Nkwodimmah; Charmaine D M Royal; Mark F Leppert; Missy Dixon; Andy Peiffer; Renzong Qiu; Alastair Kent; Kazuto Kato; Norio Niikawa; Isaac F Adewole; Bartha M Knoppers; Morris W Foster; Ellen Wright Clayton; Jessica Watkin; Richard A Gibbs; John W Belmont; Donna Muzny; Lynne Nazareth; Erica Sodergren; George M Weinstock; David A Wheeler; Imtaz Yakub; Stacey B Gabriel; Robert C Onofrio; Daniel J Richter; Liuda Ziaugra; Bruce W Birren; Mark J Daly; David Altshuler; Richard K Wilson; Lucinda L Fulton; Jane Rogers; John Burton; Nigel P Carter; Christopher M Clee; Mark Griffiths; Matthew C Jones; Kirsten McLay; Robert W Plumb; Mark T Ross; Sarah K Sims; David L Willey; Zhu Chen; Hua Han; Le Kang; Martin Godbout; John C Wallenburg; Paul L'Archevêque; Guy Bellemare; Koji Saeki; Hongguang Wang; Daochang An; Hongbo Fu; Qing Li; Zhen Wang; Renwu Wang; Arthur L Holden; Lisa D Brooks; Jean E McEwen; Mark S Guyer; Vivian Ota Wang; Jane L Peterson; Michael Shi; Jack Spiegel; Lawrence M Sung; Lynn F Zacharia; Francis S Collins; Karen Kennedy; Ruth Jamieson; John Stewart
Journal:  Nature       Date:  2007-10-18       Impact factor: 49.962

10.  Genome-wide associations of gene expression variation in humans.

Authors:  Barbara E Stranger; Matthew S Forrest; Andrew G Clark; Mark J Minichiello; Samuel Deutsch; Robert Lyle; Sarah Hunt; Brenda Kahl; Stylianos E Antonarakis; Simon Tavaré; Panagiotis Deloukas; Emmanouil T Dermitzakis
Journal:  PLoS Genet       Date:  2005-12-16       Impact factor: 5.917

View more
  18 in total

Review 1.  Genome-wide allele-specific analysis: insights into regulatory variation.

Authors:  Tomi Pastinen
Journal:  Nat Rev Genet       Date:  2010-06-22       Impact factor: 53.242

2.  Allelic imbalance (AI) identifies novel tissue-specific cis-regulatory variation for human UGT2B15.

Authors:  Chang Sun; Catherine Southard; David B Witonsky; Olufunmilayo I Olopade; Anna Di Rienzo
Journal:  Hum Mutat       Date:  2010-01       Impact factor: 4.878

3.  Allele-specific gene expression in a wild nonhuman primate population.

Authors:  J Tung; M Y Akinyi; S Mutura; J Altmann; G A Wray; S C Alberts
Journal:  Mol Ecol       Date:  2011-01-13       Impact factor: 6.185

4.  Development of monozygotic twin mouse embryos from the time of blastomere separation at the two-cell stage to blastocyst.

Authors:  Mika Katayama; Mark R Ellersieck; R Michael Roberts
Journal:  Biol Reprod       Date:  2010-02-24       Impact factor: 4.285

Review 5.  Genetic, environmental and stochastic factors in monozygotic twin discordance with a focus on epigenetic differences.

Authors:  Witold Czyz; Julia M Morahan; George C Ebers; Sreeram V Ramagopalan
Journal:  BMC Med       Date:  2012-08-17       Impact factor: 8.775

6.  Global patterns of cis variation in human cells revealed by high-density allelic expression analysis.

Authors:  Bing Ge; Dmitry K Pokholok; Tony Kwan; Elin Grundberg; Lisanne Morcos; Dominique J Verlaan; Jennie Le; Vonda Koka; Kevin C L Lam; Vincent Gagné; Joana Dias; Rose Hoberman; Alexandre Montpetit; Marie-Michele Joly; Edward J Harvey; Daniel Sinnett; Patrick Beaulieu; Robert Hamon; Alexandru Graziani; Ken Dewar; Eef Harmsen; Jacek Majewski; Harald H H Göring; Anna K Naumova; Mathieu Blanchette; Kevin L Gunderson; Tomi Pastinen
Journal:  Nat Genet       Date:  2009-10-18       Impact factor: 38.330

Review 7.  Genetics of human gene expression: mapping DNA variants that influence gene expression.

Authors:  Vivian G Cheung; Richard S Spielman
Journal:  Nat Rev Genet       Date:  2009-07-28       Impact factor: 53.242

8.  Genomic features that predict allelic imbalance in humans suggest patterns of constraint on gene expression variation.

Authors:  Jenny Tung; Olivier Fédrigo; Ralph Haygood; Sayan Mukherjee; Gregory A Wray
Journal:  Mol Biol Evol       Date:  2009-06-08       Impact factor: 16.240

9.  Human placental-specific epipolymorphism and its association with adverse pregnancy outcomes.

Authors:  Ryan K C Yuen; Luana Avila; Maria S Peñaherrera; Peter von Dadelszen; Louis Lefebvre; Michael S Kobor; Wendy P Robinson
Journal:  PLoS One       Date:  2009-10-19       Impact factor: 3.240

10.  Extent of differential allelic expression of candidate breast cancer genes is similar in blood and breast.

Authors:  Ana-Teresa Maia; Inmaculada Spiteri; Alvin J X Lee; Martin O'Reilly; Linda Jones; Carlos Caldas; Bruce A J Ponder
Journal:  Breast Cancer Res       Date:  2009-12-10       Impact factor: 6.466

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.