Literature DB >> 19636342

Genetics of human gene expression: mapping DNA variants that influence gene expression.

Vivian G Cheung1, Richard S Spielman.   

Abstract

There is extensive natural variation in human gene expression. As quantitative phenotypes, expression levels of genes are heritable. Genetic linkage and association mapping have identified cis- and trans-acting DNA variants that influence expression levels of human genes. New insights into human gene regulation are emerging from genetic analyses of gene expression in cells at rest and following exposure to stimuli. The integration of these genetic mapping results with data from co-expression networks is leading to a better understanding of how expression levels of individual genes are regulated and how genes interact with each other. These findings are important for basic understanding of gene regulation and of diseases that result from disruption of normal gene regulation.

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Year:  2009        PMID: 19636342      PMCID: PMC2989458          DOI: 10.1038/nrg2630

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  75 in total

1.  Family-based tests of association and linkage that use unaffected sibs, covariates, and interactions.

Authors:  K L Lunetta; S V Faraone; J Biederman; N M Laird
Journal:  Am J Hum Genet       Date:  2000-02       Impact factor: 11.025

2.  A general test of association for quantitative traits in nuclear families.

Authors:  G R Abecasis; L R Cardon; W O Cookson
Journal:  Am J Hum Genet       Date:  2000-01       Impact factor: 11.025

3.  Genetical genomics: the added value from segregation.

Authors:  R C Jansen; J P Nap
Journal:  Trends Genet       Date:  2001-07       Impact factor: 11.639

Review 4.  The genetics of variation in gene expression.

Authors:  Vivian G Cheung; Richard S Spielman
Journal:  Nat Genet       Date:  2002-12       Impact factor: 38.330

5.  Natural variation in human gene expression assessed in lymphoblastoid cells.

Authors:  Vivian G Cheung; Laura K Conlin; Teresa M Weber; Melissa Arcaro; Kuang-Yu Jen; Michael Morley; Richard S Spielman
Journal:  Nat Genet       Date:  2003-02-03       Impact factor: 38.330

6.  Pedigree tests of transmission disequilibrium.

Authors:  G R Abecasis; W O Cookson; L R Cardon
Journal:  Eur J Hum Genet       Date:  2000-07       Impact factor: 4.246

7.  Genetic dissection of transcriptional regulation in budding yeast.

Authors:  Rachel B Brem; Gaël Yvert; Rebecca Clinton; Leonid Kruglyak
Journal:  Science       Date:  2002-03-28       Impact factor: 47.728

8.  Genetics of gene expression surveyed in maize, mouse and man.

Authors:  Eric E Schadt; Stephanie A Monks; Thomas A Drake; Aldons J Lusis; Nam Che; Veronica Colinayo; Thomas G Ruff; Stephen B Milligan; John R Lamb; Guy Cavet; Peter S Linsley; Mao Mao; Roland B Stoughton; Stephen H Friend
Journal:  Nature       Date:  2003-03-20       Impact factor: 49.962

9.  Individuality and variation in gene expression patterns in human blood.

Authors:  Adeline R Whitney; Maximilian Diehn; Stephen J Popper; Ash A Alizadeh; Jennifer C Boldrick; David A Relman; Patrick O Brown
Journal:  Proc Natl Acad Sci U S A       Date:  2003-02-10       Impact factor: 11.205

10.  Genetic analysis of radiation-induced changes in human gene expression.

Authors:  Denis A Smirnov; Michael Morley; Eunice Shin; Richard S Spielman; Vivian G Cheung
Journal:  Nature       Date:  2009-04-06       Impact factor: 49.962

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  131 in total

1.  Genetic control of gene expression in whole blood and lymphoblastoid cell lines is largely independent.

Authors:  Joseph E Powell; Anjali K Henders; Allan F McRae; Margaret J Wright; Nicholas G Martin; Emmanouil T Dermitzakis; Grant W Montgomery; Peter M Visscher
Journal:  Genome Res       Date:  2011-12-19       Impact factor: 9.043

Review 2.  Phenotyping patient-derived cells for translational studies in cardiovascular disease.

Authors:  Stanley Y Shaw; Ari D Brettman
Journal:  Circulation       Date:  2011-11-29       Impact factor: 29.690

3.  Genetic and functional analyses implicate the NUDT11, HNF1B, and SLC22A3 genes in prostate cancer pathogenesis.

Authors:  Chiara Grisanzio; Lillian Werner; David Takeda; Bisola C Awoyemi; Mark M Pomerantz; Hiroki Yamada; Prasanna Sooriakumaran; Brian D Robinson; Robert Leung; Anna C Schinzel; Ian Mills; Helen Ross-Adams; David E Neal; Masahito Kido; Toshihiro Yamamoto; Gillian Petrozziello; Edward C Stack; Rosina Lis; Philip W Kantoff; Massimo Loda; Oliver Sartor; Shin Egawa; Ashutosh K Tewari; William C Hahn; Matthew L Freedman
Journal:  Proc Natl Acad Sci U S A       Date:  2012-06-22       Impact factor: 11.205

4.  Correction for hidden confounders in the genetic analysis of gene expression.

Authors:  Jennifer Listgarten; Carl Kadie; Eric E Schadt; David Heckerman
Journal:  Proc Natl Acad Sci U S A       Date:  2010-09-01       Impact factor: 11.205

Review 5.  Small insertions and deletions (INDELs) in human genomes.

Authors:  Julienne M Mullaney; Ryan E Mills; W Stephen Pittard; Scott E Devine
Journal:  Hum Mol Genet       Date:  2010-09-21       Impact factor: 6.150

6.  Seq-ing regulatory variants.

Authors:  Mary Muers
Journal:  Nat Rev Genet       Date:  2010-05       Impact factor: 53.242

7.  Genetics of gene expression: Mapping across tissues.

Authors:  Louisa Flintoft
Journal:  Nat Rev Genet       Date:  2010-06       Impact factor: 53.242

8.  Epigenetic differences in normal colon mucosa of cancer patients suggest altered dietary metabolic pathways.

Authors:  Matthew L Silviera; Brian P Smith; Jasmine Powell; Carmen Sapienza
Journal:  Cancer Prev Res (Phila)       Date:  2012-02-01

Review 9.  Computational tools for discovery and interpretation of expression quantitative trait loci.

Authors:  Fred A Wright; Andrey A Shabalin; Ivan Rusyn
Journal:  Pharmacogenomics       Date:  2012-02       Impact factor: 2.533

Review 10.  Protective alleles and modifier variants in human health and disease.

Authors:  Andrew R Harper; Shalini Nayee; Eric J Topol
Journal:  Nat Rev Genet       Date:  2015-10-27       Impact factor: 53.242

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