Literature DB >> 31128430

Synthetic development: building mammalian multicellular structures with artificial genetic programs.

Marco Santorelli1, Calvin Lam1, Leonardo Morsut2.   

Abstract

Synthetic biology efforts began in simple single-cell systems, which were relatively easy to manipulate genetically (Cameron et al., 2014). The field grew exponentially in the last two decades, and one of the latest frontiers are synthetic developmental programs for multicellular mammalian systems (Black et al., 2017; Wieland and Fussenegger, 2012) to genetically control features such as patterning or morphogenesis. These programs rely on engineered cell-cell communications, multicellular gene regulatory networks and effector genes. Here, we contextualize the first of these synthetic developmental programs, examine molecular and computational tools that can be used to generate next generation versions, and present the general logic that underpins these approaches. These advances are exciting as they represent a novel way to address both control and understanding in the field of developmental biology and tissue development (Elowitz and Lim, 2010; Velazquez et al., 2018; White et al., 2018; Morsut, 2017). This field is just at the beginning, and it promises to be of major interest in the upcoming years of biomedical research.
Copyright © 2019 Elsevier Ltd. All rights reserved.

Entities:  

Year:  2019        PMID: 31128430      PMCID: PMC6778502          DOI: 10.1016/j.copbio.2019.03.016

Source DB:  PubMed          Journal:  Curr Opin Biotechnol        ISSN: 0958-1669            Impact factor:   9.740


  69 in total

Review 1.  Reconstruction of genetic circuits.

Authors:  David Sprinzak; Michael B Elowitz
Journal:  Nature       Date:  2005-11-24       Impact factor: 49.962

2.  Kinetic Monte Carlo and cellular particle dynamics simulations of multicellular systems.

Authors:  Elijah Flenner; Lorant Janosi; Bogdan Barz; Adrian Neagu; Gabor Forgacs; Ioan Kosztin
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2012-03-08

3.  Stoichiometry of Gata4, Mef2c, and Tbx5 influences the efficiency and quality of induced cardiac myocyte reprogramming.

Authors:  Li Wang; Ziqing Liu; Chaoying Yin; Huda Asfour; Olivia Chen; Yanzhen Li; Nenad Bursac; Jiandong Liu; Li Qian
Journal:  Circ Res       Date:  2014-11-21       Impact factor: 17.367

4.  Emergent Stratification in Solid Tumors Selects for Reduced Cohesion of Tumor Cells: A Multi-Cell, Virtual-Tissue Model of Tumor Evolution Using CompuCell3D.

Authors:  Maciej H Swat; Gilberto L Thomas; Abbas Shirinifard; Sherry G Clendenon; James A Glazier
Journal:  PLoS One       Date:  2015-06-17       Impact factor: 3.240

5.  Rewiring human cellular input-output using modular extracellular sensors.

Authors:  Kelly A Schwarz; Nichole M Daringer; Taylor B Dolberg; Joshua N Leonard
Journal:  Nat Chem Biol       Date:  2016-12-12       Impact factor: 15.040

6.  Spots and stripes: pleomorphic patterning of stem cells via p-ERK-dependent cell chemotaxis shown by feather morphogenesis and mathematical simulation.

Authors:  Chih-Min Lin; Ting Xin Jiang; Ruth E Baker; Philip K Maini; Randall B Widelitz; Cheng-Ming Chuong
Journal:  Dev Biol       Date:  2009-08-06       Impact factor: 3.582

7.  Synthetic biology: Sensing with modular receptors.

Authors:  Jamie Brenner; Jang Hwan Cho; Wilson W Wong
Journal:  Nat Chem Biol       Date:  2017-01-19       Impact factor: 16.174

8.  Engineering cell sensing and responses using a GPCR-coupled CRISPR-Cas system.

Authors:  Nathan H Kipniss; P C Dave P Dingal; Timothy R Abbott; Yuchen Gao; Haifeng Wang; Antonia A Dominguez; Louai Labanieh; Lei S Qi
Journal:  Nat Commun       Date:  2017-12-20       Impact factor: 14.919

9.  Cell-Cell Contact Area Affects Notch Signaling and Notch-Dependent Patterning.

Authors:  Oren Shaya; Udi Binshtok; Micha Hersch; Dmitri Rivkin; Sheila Weinreb; Liat Amir-Zilberstein; Bassma Khamaisi; Olya Oppenheim; Ravi A Desai; Richard J Goodyear; Guy P Richardson; Christopher S Chen; David Sprinzak
Journal:  Dev Cell       Date:  2017-03-13       Impact factor: 12.270

10.  A fluid-to-solid jamming transition underlies vertebrate body axis elongation.

Authors:  Alessandro Mongera; Payam Rowghanian; Hannah J Gustafson; Elijah Shelton; David A Kealhofer; Emmet K Carn; Friedhelm Serwane; Adam A Lucio; James Giammona; Otger Campàs
Journal:  Nature       Date:  2018-09-05       Impact factor: 49.962

View more
  9 in total

1.  SyNPL: Synthetic Notch pluripotent cell lines to monitor and manipulate cell interactions in vitro and in vivo.

Authors:  Mattias Malaguti; Rosa Portero Migueles; Jennifer Annoh; Daina Sadurska; Guillaume Blin; Sally Lowell
Journal:  Development       Date:  2022-06-23       Impact factor: 6.862

2.  Synthetic Developmental Biology: Understanding Through Reconstitution.

Authors:  Gavin Schlissel; Pulin Li
Journal:  Annu Rev Cell Dev Biol       Date:  2020-10-06       Impact factor: 13.827

3.  Bottom-up de novo design of functional proteins with complex structural features.

Authors:  Che Yang; Fabian Sesterhenn; Jaume Bonet; Eva A van Aalen; Leo Scheller; Luciano A Abriata; Johannes T Cramer; Xiaolin Wen; Stéphane Rosset; Sandrine Georgeon; Theodore Jardetzky; Thomas Krey; Martin Fussenegger; Maarten Merkx; Bruno E Correia
Journal:  Nat Chem Biol       Date:  2021-01-04       Impact factor: 15.040

4.  Rewiring of endogenous signaling pathways to genomic targets for therapeutic cell reprogramming.

Authors:  Krzysztof Krawczyk; Leo Scheller; Hyojin Kim; Martin Fussenegger
Journal:  Nat Commun       Date:  2020-01-30       Impact factor: 14.919

Review 5.  Novel synthetic biology approaches for developmental systems.

Authors:  Christine Ho; Leonardo Morsut
Journal:  Stem Cell Reports       Date:  2021-05-11       Impact factor: 7.765

6.  Programming cell growth into different cluster shapes using diffusible signals.

Authors:  Yipei Guo; Mor Nitzan; Michael P Brenner
Journal:  PLoS Comput Biol       Date:  2021-11-08       Impact factor: 4.475

7.  Optogenetic control of apical constriction induces synthetic morphogenesis in mammalian tissues.

Authors:  Guillermo Martínez-Ara; Núria Taberner; Mami Takayama; Elissavet Sandaltzopoulou; Casandra E Villava; Miquel Bosch-Padrós; Nozomu Takata; Xavier Trepat; Mototsugu Eiraku; Miki Ebisuya
Journal:  Nat Commun       Date:  2022-09-14       Impact factor: 17.694

Review 8.  Synthetic living machines: A new window on life.

Authors:  Mo R Ebrahimkhani; Michael Levin
Journal:  iScience       Date:  2021-05-04

9.  Synthetic tissue engineering: Programming multicellular self-organization by designing customized cell-cell communication.

Authors:  Satoshi Toda
Journal:  Biophys Physicobiol       Date:  2020-06-09
  9 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.