Literature DB >> 18508252

New twists in X-chromosome inactivation.

Jennifer A Erwin1, Jeannie T Lee.   

Abstract

Dosage compensation, the mechanism by which organisms equalize the relative gene expression of dimorphic sex chromosomes, requires action of a diverse range of epigenetic mechanisms. The mammalian form, 'named X-chromosome inactivation' (XCI), involves silencing of one X chromosome in the female cell and regulation by genes that make noncoding RNAs (ncRNA). With large-scale genomic and transcriptome studies pointing to a crucial role for noncoding elements in organizing the epigenome, XCI emerges as a major paradigm and a focus of active research worldwide. With more surprising twists, recent advances point to the significance of RNA-directed chromatin change, chromosomal trans-interactions, nuclear organization, and evolutionary change. These findings have impacted our understanding of general gene regulation and are discussed herein.

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Year:  2008        PMID: 18508252      PMCID: PMC2491718          DOI: 10.1016/j.ceb.2008.04.007

Source DB:  PubMed          Journal:  Curr Opin Cell Biol        ISSN: 0955-0674            Impact factor:   8.382


  70 in total

1.  The Xist RNA gene evolved in eutherians by pseudogenization of a protein-coding gene.

Authors:  Laurent Duret; Corinne Chureau; Sylvie Samain; Jean Weissenbach; Philip Avner
Journal:  Science       Date:  2006-06-16       Impact factor: 47.728

2.  Transient colocalization of X-inactivation centres accompanies the initiation of X inactivation.

Authors:  Christian P Bacher; Michèle Guggiari; Benedikt Brors; Sandrine Augui; Philippe Clerc; Philip Avner; Roland Eils; Edith Heard
Journal:  Nat Cell Biol       Date:  2006-01-24       Impact factor: 28.824

3.  The X chromosome is organized into a gene-rich outer rim and an internal core containing silenced nongenic sequences.

Authors:  Christine Moulton Clemson; Lisa L Hall; Meg Byron; John McNeil; Jeanne Bentley Lawrence
Journal:  Proc Natl Acad Sci U S A       Date:  2006-05-08       Impact factor: 11.205

4.  Further evidence for BRCA1 communication with the inactive X chromosome.

Authors:  Daniel P Silver; Stoil D Dimitrov; Jean Feunteun; Rebecca Gelman; Ronny Drapkin; Shihua D Lu; Elena Shestakova; Soundarapandian Velmurugan; Nicholas Denunzio; Serban Dragomir; Jessica Mar; Xiaoling Liu; Sven Rottenberg; Jos Jonkers; Shridar Ganesan; David M Livingston
Journal:  Cell       Date:  2007-03-09       Impact factor: 41.582

5.  The XIST noncoding RNA functions independently of BRCA1 in X inactivation.

Authors:  Cuiying Xiao; Judith A Sharp; Misako Kawahara; Albert R Davalos; Michael J Difilippantonio; Ying Hu; Wenmei Li; Liu Cao; Ken Buetow; Thomas Ried; Brian P Chadwick; Chu-Xia Deng; Barbara Panning
Journal:  Cell       Date:  2007-03-09       Impact factor: 41.582

6.  The search for a marsupial XIC reveals a break with vertebrate synteny.

Authors:  Lance S Davidow; Matthew Breen; Shannon E Duke; Paul B Samollow; John R McCarrey; Jeannie T Lee
Journal:  Chromosome Res       Date:  2007-03-05       Impact factor: 5.239

7.  The region homologous to the X-chromosome inactivation centre has been disrupted in marsupial and monotreme mammals.

Authors:  Timothy A Hore; Edda Koina; Matthew J Wakefield; Jennifer A Marshall Graves
Journal:  Chromosome Res       Date:  2007-03-05       Impact factor: 5.239

8.  Postmeiotic sex chromatin in the male germline of mice.

Authors:  Satoshi H Namekawa; Peter J Park; Li-Feng Zhang; James E Shima; John R McCarrey; Michael D Griswold; Jeannie T Lee
Journal:  Curr Biol       Date:  2006-04-04       Impact factor: 10.834

9.  X chromosomes alternate between two states prior to random X-inactivation.

Authors:  Susanna Mlynarczyk-Evans; Morgan Royce-Tolland; Mary Kate Alexander; Angela A Andersen; Sundeep Kalantry; Joost Gribnau; Barbara Panning
Journal:  PLoS Biol       Date:  2006-05-09       Impact factor: 8.029

10.  The Polycomb group protein EED is dispensable for the initiation of random X-chromosome inactivation.

Authors:  Sundeep Kalantry; Terry Magnuson
Journal:  PLoS Genet       Date:  2006-05-05       Impact factor: 5.917

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  20 in total

1.  Comparative analysis of the primate X-inactivation center region and reconstruction of the ancestral primate XIST locus.

Authors:  Julie E Horvath; Christina B Sheedy; Stephanie L Merrett; Abdoulaye Banire Diallo; David L Swofford; Eric D Green; Huntington F Willard
Journal:  Genome Res       Date:  2011-04-25       Impact factor: 9.043

Review 2.  The origin and evolution of vertebrate sex chromosomes and dosage compensation.

Authors:  A M Livernois; J A M Graves; P D Waters
Journal:  Heredity (Edinb)       Date:  2011-11-16       Impact factor: 3.821

3.  Identification of cis- and trans-acting factors involved in the localization of MALAT-1 noncoding RNA to nuclear speckles.

Authors:  Ryu Miyagawa; Keiko Tano; Rie Mizuno; Yo Nakamura; Kenichi Ijiri; Randeep Rakwal; Junko Shibato; Yoshinori Masuo; Akila Mayeda; Tetsuro Hirose; Nobuyoshi Akimitsu
Journal:  RNA       Date:  2012-02-21       Impact factor: 4.942

Review 4.  Cutting-edge issues in primary biliary cirrhosis.

Authors:  Marco Folci; Francesca Meda; M Eric Gershwin; Carlo Selmi
Journal:  Clin Rev Allergy Immunol       Date:  2012-06       Impact factor: 8.667

Review 5.  Sexual dimorphism in ischemic stroke: lessons from the laboratory.

Authors:  Bharti Manwani; Louise D McCullough
Journal:  Womens Health (Lond)       Date:  2011-05

6.  The meaning of gene positioning.

Authors:  Takumi Takizawa; Karen J Meaburn; Tom Misteli
Journal:  Cell       Date:  2008-10-03       Impact factor: 41.582

7.  Transcriptional changes in response to X chromosome dosage in the mouse: implications for X inactivation and the molecular basis of Turner Syndrome.

Authors:  Alexandra M Lopes; Paul S Burgoyne; Andrew Ojarikre; Julien Bauer; Carole A Sargent; António Amorim; Nabeel A Affara
Journal:  BMC Genomics       Date:  2010-02-01       Impact factor: 3.969

8.  Architectural protein subclasses shape 3D organization of genomes during lineage commitment.

Authors:  Jennifer E Phillips-Cremins; Michael E G Sauria; Amartya Sanyal; Tatiana I Gerasimova; Bryan R Lajoie; Joshua S K Bell; Chin-Tong Ong; Tracy A Hookway; Changying Guo; Yuhua Sun; Michael J Bland; William Wagstaff; Stephen Dalton; Todd C McDevitt; Ranjan Sen; Job Dekker; James Taylor; Victor G Corces
Journal:  Cell       Date:  2013-05-23       Impact factor: 41.582

9.  Aberrant epigenetic silencing is triggered by a transient reduction in gene expression.

Authors:  Jon A Oyer; Adrian Chu; Sukhmani Brar; Mitchell S Turker
Journal:  PLoS One       Date:  2009-03-12       Impact factor: 3.240

10.  Misbehaviour of XIST RNA in breast cancer cells.

Authors:  Silvia M Sirchia; Silvia Tabano; Laura Monti; Maria P Recalcati; Manuela Gariboldi; Francesca R Grati; Giovanni Porta; Palma Finelli; Paolo Radice; Monica Miozzo
Journal:  PLoS One       Date:  2009-05-15       Impact factor: 3.240

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