Literature DB >> 18504530

Parametric and non-parametric modeling of short-term synaptic plasticity. Part II: Experimental study.

Dong Song1, Zhuo Wang, Vasilis Z Marmarelis, Theodore W Berger.   

Abstract

This paper presents a synergistic parametric and non-parametric modeling study of short-term plasticity (STP) in the Schaffer collateral to hippocampal CA1 pyramidal neuron (SC) synapse. Parametric models in the form of sets of differential and algebraic equations have been proposed on the basis of the current understanding of biological mechanisms active within the system. Non-parametric Poisson-Volterra models are obtained herein from broadband experimental input-output data. The non-parametric model is shown to provide better prediction of the experimental output than a parametric model with a single set of facilitation/depression (FD) process. The parametric model is then validated in terms of its input-output transformational properties using the non-parametric model since the latter constitutes a canonical and more complete representation of the synaptic nonlinear dynamics. Furthermore, discrepancies between the experimentally-derived non-parametric model and the equivalent non-parametric model of the parametric model suggest the presence of multiple FD processes in the SC synapses. Inclusion of an additional set of FD process in the parametric model makes it replicate better the characteristics of the experimentally-derived non-parametric model. This improved parametric model in turn provides the requisite biological interpretability that the non-parametric model lacks.

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Year:  2008        PMID: 18504530      PMCID: PMC2749717          DOI: 10.1007/s10827-008-0098-2

Source DB:  PubMed          Journal:  J Comput Neurosci        ISSN: 0929-5313            Impact factor:   1.621


  34 in total

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  18 in total

1.  Hippocampal closed-loop modeling and implications for seizure stimulation design.

Authors:  Roman A Sandler; Dong Song; Robert E Hampson; Sam A Deadwyler; Theodore W Berger; Vasilis Z Marmarelis
Journal:  J Neural Eng       Date:  2015-09-10       Impact factor: 5.379

2.  Wiener-Volterra characterization of neurons in primary auditory cortex using poisson-distributed impulse train inputs.

Authors:  Martin Pienkowski; Greg Shaw; Jos J Eggermont
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3.  Model-based asessment of an in-vivo predictive relationship from CA1 to CA3 in the rodent hippocampus.

Authors:  Roman A Sandler; Dong Song; Robert E Hampson; Sam A Deadwyler; Theodore W Berger; Vasilis Z Marmarelis
Journal:  J Comput Neurosci       Date:  2014-09-27       Impact factor: 1.621

4.  A hippocampal cognitive prosthesis: multi-input, multi-output nonlinear modeling and VLSI implementation.

Authors:  Theodore W Berger; Dong Song; Rosa H M Chan; Vasilis Z Marmarelis; Jeff LaCoss; Jack Wills; Robert E Hampson; Sam A Deadwyler; John J Granacki
Journal:  IEEE Trans Neural Syst Rehabil Eng       Date:  2012-03       Impact factor: 3.802

5.  A nonlinear model for hippocampal cognitive prosthesis: memory facilitation by hippocampal ensemble stimulation.

Authors:  Robert E Hampson; Dong Song; Rosa H M Chan; Andrew J Sweatt; Mitchell R Riley; Gregory A Gerhardt; Dae C Shin; Vasilis Z Marmarelis; Theodore W Berger; Samuel A Deadwyler
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6.  Nonlinear dynamic modeling of synaptically driven single hippocampal neuron intracellular activity.

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7.  Nonlinear dynamic modeling of neuron action potential threshold during synaptically driven broadband intracellular activity.

Authors:  Ude Lu; Shane M Roach; Dong Song; Theodore W Berger
Journal:  IEEE Trans Biomed Eng       Date:  2011-12-06       Impact factor: 4.538

8.  The Neurobiological Basis of Cognition: Identification by Multi-Input, Multioutput Nonlinear Dynamic Modeling: A method is proposed for measuring and modeling human long-term memory formation by mathematical analysis and computer simulation of nerve-cell dynamics.

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9.  Identification of sparse neural functional connectivity using penalized likelihood estimation and basis functions.

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10.  Nonlinear modeling of neural population dynamics for hippocampal prostheses.

Authors:  Dong Song; Rosa H M Chan; Vasilis Z Marmarelis; Robert E Hampson; Sam A Deadwyler; Theodore W Berger
Journal:  Neural Netw       Date:  2009-05-22
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