Literature DB >> 19501484

Nonlinear modeling of neural population dynamics for hippocampal prostheses.

Dong Song1, Rosa H M Chan, Vasilis Z Marmarelis, Robert E Hampson, Sam A Deadwyler, Theodore W Berger.   

Abstract

Developing a neural prosthesis for the damaged hippocampus requires restoring the transformation of population neural activities performed by the hippocampal circuitry. To bypass a damaged region, output spike trains need to be predicted from the input spike trains and then reinstated through stimulation. We formulate a multiple-input, multiple-output (MIMO) nonlinear dynamic model for the input-output transformation of spike trains. In this approach, a MIMO model comprises a series of physiologically-plausible multiple-input, single-output (MISO) neuron models that consist of five components each: (1) feedforward Volterra kernels transforming the input spike trains into the synaptic potential, (2) a feedback kernel transforming the output spikes into the spike-triggered after-potential, (3) a noise term capturing the system uncertainty, (4) an adder generating the pre-threshold potential, and (5) a threshold function generating output spikes. It is shown that this model is equivalent to a generalized linear model with a probit link function. To reduce model complexity and avoid overfitting, statistical model selection and cross-validation methods are employed to choose the significant inputs and interactions between inputs. The model is applied successfully to the hippocampal CA3-CA1 population dynamics. Such a model can serve as a computational basis for the development of hippocampal prostheses.

Entities:  

Mesh:

Year:  2009        PMID: 19501484      PMCID: PMC2821165          DOI: 10.1016/j.neunet.2009.05.004

Source DB:  PubMed          Journal:  Neural Netw        ISSN: 0893-6080


  29 in total

1.  Distribution of spatial and nonspatial information in dorsal hippocampus.

Authors:  R E Hampson; J D Simeral; S A Deadwyler
Journal:  Nature       Date:  1999-12-09       Impact factor: 49.962

2.  The time-rescaling theorem and its application to neural spike train data analysis.

Authors:  Emery N Brown; Riccardo Barbieri; Valérie Ventura; Robert E Kass; Loren M Frank
Journal:  Neural Comput       Date:  2002-02       Impact factor: 2.026

Review 3.  Inference and computation with population codes.

Authors:  Alexandre Pouget; Peter Dayan; Richard S Zemel
Journal:  Annu Rev Neurosci       Date:  2003-04-10       Impact factor: 12.449

Review 4.  The human hippocampus and spatial and episodic memory.

Authors:  Neil Burgess; Eleanor A Maguire; John O'Keefe
Journal:  Neuron       Date:  2002-08-15       Impact factor: 17.173

5.  Generalized integrate-and-fire models of neuronal activity approximate spike trains of a detailed model to a high degree of accuracy.

Authors:  Renaud Jolivet; Timothy J Lewis; Wulfram Gerstner
Journal:  J Neurophysiol       Date:  2004-08       Impact factor: 2.714

6.  Analyzing multiple spike trains with nonparametric Granger causality.

Authors:  Aatira G Nedungadi; Govindan Rangarajan; Neeraj Jain; Mingzhou Ding
Journal:  J Comput Neurosci       Date:  2009-01-10       Impact factor: 1.621

Review 7.  Action potential repolarization and a fast after-hyperpolarization in rat hippocampal pyramidal cells.

Authors:  J F Storm
Journal:  J Physiol       Date:  1987-04       Impact factor: 5.182

8.  Neuronal population coding of movement direction.

Authors:  A P Georgopoulos; A B Schwartz; R E Kettner
Journal:  Science       Date:  1986-09-26       Impact factor: 47.728

9.  Contribution of T-type VDCC to TEA-induced long-term synaptic modification in hippocampal CA1 and dentate gyrus.

Authors:  Dong Song; Zhuo Wang; Theodore W Berger
Journal:  Hippocampus       Date:  2002       Impact factor: 3.899

10.  Pharmacological evidence for two kinds of GABA receptor on rat hippocampal pyramidal cells studied in vitro.

Authors:  B E Alger; R A Nicoll
Journal:  J Physiol       Date:  1982-07       Impact factor: 5.182

View more
  34 in total

1.  Hippocampal closed-loop modeling and implications for seizure stimulation design.

Authors:  Roman A Sandler; Dong Song; Robert E Hampson; Sam A Deadwyler; Theodore W Berger; Vasilis Z Marmarelis
Journal:  J Neural Eng       Date:  2015-09-10       Impact factor: 5.379

2.  Statistical analysis of large-scale neuronal recording data.

Authors:  Jamie L Reed; Jon H Kaas
Journal:  Neural Netw       Date:  2010-04-26

3.  Facilitation and restoration of cognitive function in primate prefrontal cortex by a neuroprosthesis that utilizes minicolumn-specific neural firing.

Authors:  Robert E Hampson; Greg A Gerhardt; Vasilis Marmarelis; Dong Song; Ioan Opris; Lucas Santos; Theodore W Berger; Sam A Deadwyler
Journal:  J Neural Eng       Date:  2012-09-13       Impact factor: 5.379

4.  A nonlinear autoregressive Volterra model of the Hodgkin-Huxley equations.

Authors:  Steffen E Eikenberry; Vasilis Z Marmarelis
Journal:  J Comput Neurosci       Date:  2012-08-10       Impact factor: 1.621

5.  A cortical neural prosthesis for restoring and enhancing memory.

Authors:  Theodore W Berger; Robert E Hampson; Dong Song; Anushka Goonawardena; Vasilis Z Marmarelis; Sam A Deadwyler
Journal:  J Neural Eng       Date:  2011-06-15       Impact factor: 5.379

6.  Model-based asessment of an in-vivo predictive relationship from CA1 to CA3 in the rodent hippocampus.

Authors:  Roman A Sandler; Dong Song; Robert E Hampson; Sam A Deadwyler; Theodore W Berger; Vasilis Z Marmarelis
Journal:  J Comput Neurosci       Date:  2014-09-27       Impact factor: 1.621

7.  Multi-Input, Multi-Output Neuronal Mode Network Approach to Modeling the Encoding Dynamics and Functional Connectivity of Neural Systems.

Authors:  Kunling Geng; Dae C Shin; Dong Song; Robert E Hampson; Samuel A Deadwyler; Theodore W Berger; Vasilis Z Marmarelis
Journal:  Neural Comput       Date:  2019-05-21       Impact factor: 2.026

8.  Facilitation of memory encoding in primate hippocampus by a neuroprosthesis that promotes task-specific neural firing.

Authors:  Robert E Hampson; Dong Song; Ioan Opris; Lucas M Santos; Dae C Shin; Greg A Gerhardt; Vasilis Z Marmarelis; Theodore W Berger; Sam A Deadwyler
Journal:  J Neural Eng       Date:  2013-11-12       Impact factor: 5.379

9.  Design of optimal stimulation patterns for neuronal ensembles based on Volterra-type hierarchical modeling.

Authors:  V Z Marmarelis; D C Shin; R E Hampson; S A Deadwyler; D Song; T W Berger
Journal:  J Neural Eng       Date:  2012-10-17       Impact factor: 5.379

10.  Identification of sparse neural functional connectivity using penalized likelihood estimation and basis functions.

Authors:  Dong Song; Haonan Wang; Catherine Y Tu; Vasilis Z Marmarelis; Robert E Hampson; Sam A Deadwyler; Theodore W Berger
Journal:  J Comput Neurosci       Date:  2013-05-15       Impact factor: 1.621

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.