Literature DB >> 18501471

New developments in ancient genomics.

Craig D Millar1, Leon Huynen, Sankar Subramanian, Elmira Mohandesan, David M Lambert.   

Abstract

Ancient DNA research is on the crest of a 'third wave' of progress due to the introduction of a new generation of DNA sequencing technologies. Here we review the advantages and disadvantages of the four new DNA sequencers that are becoming available to researchers. These machines now allow the recovery of orders of magnitude more DNA sequence data, albeit as short sequence reads. Hence, the potential reassembly of complete ancient genomes seems imminent, and when used to screen libraries of ancient sequences, these methods are cost effective. This new wealth of data is also likely to herald investigations into the functional properties of extinct genes and gene complexes and will improve our understanding of the biological basis of extinct phenotypes.

Mesh:

Year:  2008        PMID: 18501471     DOI: 10.1016/j.tree.2008.04.002

Source DB:  PubMed          Journal:  Trends Ecol Evol        ISSN: 0169-5347            Impact factor:   17.712


  22 in total

1.  Ancient mtDNA sequences from the First Australians revisited.

Authors:  Tim H Heupink; Sankar Subramanian; Joanne L Wright; Phillip Endicott; Michael Carrington Westaway; Leon Huynen; Walther Parson; Craig D Millar; Eske Willerslev; David M Lambert
Journal:  Proc Natl Acad Sci U S A       Date:  2016-06-06       Impact factor: 11.205

2.  Efficient cross-species capture hybridization and next-generation sequencing of mitochondrial genomes from noninvasively sampled museum specimens.

Authors:  Victor C Mason; Gang Li; Kristofer M Helgen; William J Murphy
Journal:  Genome Res       Date:  2011-08-31       Impact factor: 9.043

Review 3.  Ancestry of modern Europeans: contributions of ancient DNA.

Authors:  Marie Lacan; Christine Keyser; Eric Crubézy; Bertrand Ludes
Journal:  Cell Mol Life Sci       Date:  2012-10-11       Impact factor: 9.261

4.  Successful Recovery of Nuclear Protein-Coding Genes from Small Insects in Museums Using Illumina Sequencing.

Authors:  Kojun Kanda; James M Pflug; John S Sproul; Mark A Dasenko; David R Maddison
Journal:  PLoS One       Date:  2015-12-30       Impact factor: 3.240

Review 5.  Paleomicrobiology: a Snapshot of Ancient Microbes and Approaches to Forensic Microbiology.

Authors:  Jessica I Rivera-Perez; Tasha M Santiago-Rodriguez; Gary A Toranzos
Journal:  Microbiol Spectr       Date:  2016-08

Review 6.  Ancient population genomics and the study of evolution.

Authors:  M Parks; S Subramanian; C Baroni; M C Salvatore; G Zhang; C D Millar; D M Lambert
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2015-01-19       Impact factor: 6.237

7.  Incorporating sequence quality data into alignment improves DNA read mapping.

Authors:  Martin C Frith; Raymond Wan; Paul Horton
Journal:  Nucleic Acids Res       Date:  2010-01-27       Impact factor: 16.971

Review 8.  The genomics of microbial domestication in the fermented food environment.

Authors:  John G Gibbons; David C Rinker
Journal:  Curr Opin Genet Dev       Date:  2015-08-25       Impact factor: 5.578

9.  What would you do if you could sequence everything?

Authors:  Avak Kahvejian; John Quackenbush; John F Thompson
Journal:  Nat Biotechnol       Date:  2008-10       Impact factor: 54.908

10.  The evolutionary time machine: using dormant propagules to forecast how populations can adapt to changing environments.

Authors:  Luisa Orsini; Klaus Schwenk; Luc De Meester; John K Colbourne; Michael E Pfrender; Lawrence J Weider
Journal:  Trends Ecol Evol       Date:  2013-02-08       Impact factor: 17.712

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