Literature DB >> 18500802

Ultrafast dynamics and anionic active states of the flavin cofactor in cryptochrome and photolyase.

Ya-Ting Kao1, Chuang Tan, Sang-Hun Song, Nuri Oztürk, Jiang Li, Lijuan Wang, Aziz Sancar, Dongping Zhong.   

Abstract

We report here our systematic studies of the dynamics of four redox states of the flavin cofactor in both photolyases and insect type 1 cryptochromes. With femtosecond resolution, we observed ultrafast photoreduction of oxidized state flavin adenine dinucleotide (FAD) in subpicosecond and of neutral radical semiquinone (FADH(*)) in tens of picoseconds through intraprotein electron transfer mainly with a neighboring conserved tryptophan triad. Such ultrafast dynamics make these forms of flavin unlikely to be the functional states of the photolyase/cryptochrome family. In contrast, we find that upon excitation the anionic semiquinone (FAD(*-)) and hydroquinone (FADH(-)) have longer lifetimes that are compatible with high-efficiency intermolecular electron transfer reactions. In photolyases, the excited active state (FADH(-)*) has a long (nanosecond) lifetime optimal for DNA-repair function. In insect type 1 cryptochromes known to be blue-light photoreceptors the excited active form (FAD(*-)*) has complex deactivation dynamics on the time scale from a few to hundreds of picoseconds, which is believed to occur through conical intersection(s) with a flexible bending motion to modulate the functional channel. These unique properties of anionic flavins suggest a universal mechanism of electron transfer for the initial functional steps of the photolyase/cryptochrome blue-light photoreceptor family.

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Year:  2008        PMID: 18500802      PMCID: PMC2661107          DOI: 10.1021/ja801152h

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  41 in total

1.  The photocycle of a flavin-binding domain of the blue light photoreceptor phototropin.

Authors:  T E Swartz; S B Corchnoy; J M Christie; J W Lewis; I Szundi; W R Briggs; R A Bogomolni
Journal:  J Biol Chem       Date:  2001-07-06       Impact factor: 5.157

2.  Crystal structure of reduced thioredoxin reductase from Escherichia coli: structural flexibility in the isoalloxazine ring of the flavin adenine dinucleotide cofactor.

Authors:  B W Lennon; C H Williams; M L Ludwig
Journal:  Protein Sci       Date:  1999-11       Impact factor: 6.725

3.  Action spectrum of Drosophila cryptochrome.

Authors:  Sarah J VanVickle-Chavez; Russell N Van Gelder
Journal:  J Biol Chem       Date:  2007-02-06       Impact factor: 5.157

4.  Mapping hydration dynamics around a protein surface.

Authors:  Luyuan Zhang; Lijuan Wang; Ya-Ting Kao; Weihong Qiu; Yi Yang; Oghaghare Okobiah; Dongping Zhong
Journal:  Proc Natl Acad Sci U S A       Date:  2007-11-14       Impact factor: 11.205

Review 5.  Dynamic personalities of proteins.

Authors:  Katherine Henzler-Wildman; Dorothee Kern
Journal:  Nature       Date:  2007-12-13       Impact factor: 49.962

Review 6.  Structure and function of DNA photolyase and cryptochrome blue-light photoreceptors.

Authors:  Aziz Sancar
Journal:  Chem Rev       Date:  2003-06       Impact factor: 60.622

7.  Structure of a flavin-binding plant photoreceptor domain: insights into light-mediated signal transduction.

Authors:  S Crosson; K Moffat
Journal:  Proc Natl Acad Sci U S A       Date:  2001-02-27       Impact factor: 11.205

8.  Intraprotein radical transfer during photoactivation of DNA photolyase.

Authors:  C Aubert; M H Vos; P Mathis; A P Eker; K Brettel
Journal:  Nature       Date:  2000-06-01       Impact factor: 49.962

9.  Femtosecond dynamics of flavoproteins: charge separation and recombination in riboflavine (vitamin B2)-binding protein and in glucose oxidase enzyme.

Authors:  D Zhong; A H Zewail
Journal:  Proc Natl Acad Sci U S A       Date:  2001-10-09       Impact factor: 11.205

10.  Crystal structures and molecular mechanism of a light-induced signaling switch: The Phot-LOV1 domain from Chlamydomonas reinhardtii.

Authors:  Roman Fedorov; Ilme Schlichting; Elisabeth Hartmann; Tatjana Domratcheva; Markus Fuhrmann; Peter Hegemann
Journal:  Biophys J       Date:  2003-04       Impact factor: 4.033

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  51 in total

Review 1.  Fluorescence lifetime measurements and biological imaging.

Authors:  Mikhail Y Berezin; Samuel Achilefu
Journal:  Chem Rev       Date:  2010-05-12       Impact factor: 60.622

Review 2.  Dynamics and mechanisms of DNA repair by photolyase.

Authors:  Zheyun Liu; Lijuan Wang; Dongping Zhong
Journal:  Phys Chem Chem Phys       Date:  2015-05-14       Impact factor: 3.676

3.  Reaction mechanism of Drosophila cryptochrome.

Authors:  Nuri Ozturk; Christopher P Selby; Yunus Annayev; Dongping Zhong; Aziz Sancar
Journal:  Proc Natl Acad Sci U S A       Date:  2010-12-27       Impact factor: 11.205

4.  Electron tunneling pathways and role of adenine in repair of cyclobutane pyrimidine dimer by DNA photolyase.

Authors:  Zheyun Liu; Xunmin Guo; Chuang Tan; Jiang Li; Ya-Ting Kao; Lijuan Wang; Aziz Sancar; Dongping Zhong
Journal:  J Am Chem Soc       Date:  2012-05-04       Impact factor: 15.419

Review 5.  Proton-coupled electron transfer.

Authors:  My Hang V Huynh; Thomas J Meyer
Journal:  Chem Rev       Date:  2007-11       Impact factor: 60.622

6.  Chemical magnetoreception in birds: the radical pair mechanism.

Authors:  Christopher T Rodgers; P J Hore
Journal:  Proc Natl Acad Sci U S A       Date:  2009-01-07       Impact factor: 11.205

7.  Determining complete electron flow in the cofactor photoreduction of oxidized photolyase.

Authors:  Zheyun Liu; Chuang Tan; Xunmin Guo; Jiang Li; Lijuan Wang; Aziz Sancar; Dongping Zhong
Journal:  Proc Natl Acad Sci U S A       Date:  2013-07-23       Impact factor: 11.205

8.  Dynamic determination of the functional state in photolyase and the implication for cryptochrome.

Authors:  Zheyun Liu; Meng Zhang; Xunmin Guo; Chuang Tan; Jiang Li; Lijuan Wang; Aziz Sancar; Dongping Zhong
Journal:  Proc Natl Acad Sci U S A       Date:  2013-07-23       Impact factor: 11.205

9.  Femtosecond dynamics of short-range protein electron transfer in flavodoxin.

Authors:  Ting-Fang He; Lijun Guo; Xunmin Guo; Chih-Wei Chang; Lijuan Wang; Dongping Zhong
Journal:  Biochemistry       Date:  2013-12-09       Impact factor: 3.162

10.  Short-Range Electron Transfer in Reduced Flavodoxin: Ultrafast Nonequilibrium Dynamics Coupled with Protein Fluctuations.

Authors:  Mainak Kundu; Ting-Fang He; Yangyi Lu; Lijuan Wang; Dongping Zhong
Journal:  J Phys Chem Lett       Date:  2018-05-11       Impact factor: 6.475

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