Literature DB >> 18497928

DNAzymes for sensing, nanobiotechnology and logic gate applications.

Itamar Willner1, Bella Shlyahovsky, Maya Zayats, Bilha Willner.   

Abstract

Catalytic nucleic acids (DNAzymes or ribozymes) are selected by the systematic evolution of ligands by exponential enrichment process (SELEX). The catalytic functions of DNAzymes or ribozymes allow their use as amplifying labels for the development of optical or electronic sensors. The use of catalytic nucleic acids for amplified biosensing was accomplished by designing aptamer-DNAzyme conjugates that combine recognition units and amplifying readout units as in integrated biosensing materials. Alternatively, "DNA machines" that activate enzyme cascades and yield DNAzymes were tailored, and the systems led to the ultrasensitive detection of DNA. DNAzymes are also used as active components for constructing nanostructures such as aggregated nanoparticles and for the activation of logic gate operations that perform computing.

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Year:  2008        PMID: 18497928     DOI: 10.1039/b718428j

Source DB:  PubMed          Journal:  Chem Soc Rev        ISSN: 0306-0012            Impact factor:   54.564


  93 in total

1.  In vitro selection of structure-switching, self-reporting aptamers.

Authors:  Seung Soo Oh; Kory Plakos; Xinhui Lou; Yi Xiao; H Tom Soh
Journal:  Proc Natl Acad Sci U S A       Date:  2010-07-26       Impact factor: 11.205

2.  DNA computing circuits using libraries of DNAzyme subunits.

Authors:  Johann Elbaz; Oleg Lioubashevski; Fuan Wang; Françoise Remacle; Raphael D Levine; Itamar Willner
Journal:  Nat Nanotechnol       Date:  2010-05-30       Impact factor: 39.213

Review 3.  Functional nucleic acid sensors.

Authors:  Juewen Liu; Zehui Cao; Yi Lu
Journal:  Chem Rev       Date:  2009-05       Impact factor: 60.622

Review 4.  Metal-Dependent DNAzymes for the Quantitative Detection of Metal Ions in Living Cells: Recent Progress, Current Challenges, and Latest Results on FRET Ratiometric Sensors.

Authors:  Kevin Hwang; Quanbing Mou; Ryan J Lake; Mengyi Xiong; Brandalynn Holland; Yi Lu
Journal:  Inorg Chem       Date:  2019-07-31       Impact factor: 5.165

5.  Coarse-Grained Brownian Dynamics Simulations of the 10-23 DNAzyme.

Authors:  Martin Kenward; Kevin D Dorfman
Journal:  Biophys J       Date:  2009-11-18       Impact factor: 4.033

Review 6.  Dynamic DNA nanotechnology using strand-displacement reactions.

Authors:  David Yu Zhang; Georg Seelig
Journal:  Nat Chem       Date:  2011-02       Impact factor: 24.427

Review 7.  Perspective on optical biosensors and integrated sensor systems.

Authors:  Frances S Ligler
Journal:  Anal Chem       Date:  2009-01-15       Impact factor: 6.986

8.  DNA Antenna Tile-Associated Deoxyribozyme Sensor with Improved Sensitivity.

Authors:  Amanda J Cox; Hillary N Bengtson; Yulia V Gerasimova; Kyle H Rohde; Dmitry M Kolpashchikov
Journal:  Chembiochem       Date:  2016-09-13       Impact factor: 3.164

9.  MNAzymes, a versatile new class of nucleic acid enzymes that can function as biosensors and molecular switches.

Authors:  Elisa Mokany; Simon M Bone; Paul E Young; Tram B Doan; Alison V Todd
Journal:  J Am Chem Soc       Date:  2010-01-27       Impact factor: 15.419

10.  Expanding targets of DNAzyme-based sensors through deactivation and activation of DNAzymes by single uracil removal: sensitive fluorescent assay of uracil-DNA glycosylase.

Authors:  Yu Xiang; Yi Lu
Journal:  Anal Chem       Date:  2012-10-29       Impact factor: 6.986

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