Literature DB >> 18491122

The SNPforID browser: an online tool for query and display of frequency data from the SNPforID project.

Jorge Amigo1, Christopher Phillips, Maviky Lareu, Angel Carracedo.   

Abstract

The SNPforID browser is a web-based tool for the query and visualization of the SNP allele frequency data generated by the SNPforID consortium ( http://www.snpforid.org/ ). From this project, validated panels of single nucleotide polymorphisms (SNPs) for a variety of forensic applications have been generated with the browser concentrating on the single-tube identification SNP set comprising 52 markers. A web interface allows the visitor to review the allele frequencies of the studied markers from all the available populations used by SNPforID to validate global SNP variability. The interface has been designed to offer the useful facility of combining populations into appropriate geographic groups for visual comparison of populations individually or amongst user-defined groupings and with equivalent HapMap data.

Mesh:

Year:  2008        PMID: 18491122     DOI: 10.1007/s00414-008-0233-7

Source DB:  PubMed          Journal:  Int J Legal Med        ISSN: 0937-9827            Impact factor:   2.686


  12 in total

1.  STRBase: a short tandem repeat DNA database for the human identity testing community.

Authors:  C M Ruitberg; D J Reeder; J M Butler
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

2.  A human genome diversity cell line panel.

Authors:  Howard M Cann; Claudia de Toma; Lucien Cazes; Marie-Fernande Legrand; Valerie Morel; Laurence Piouffre; Julia Bodmer; Walter F Bodmer; Batsheva Bonne-Tamir; Anne Cambon-Thomsen; Zhu Chen; J Chu; Carlo Carcassi; Licinio Contu; Ruofu Du; Laurent Excoffier; G B Ferrara; Jonathan S Friedlaender; Helena Groot; David Gurwitz; Trefor Jenkins; Rene J Herrera; Xiaoyi Huang; Judith Kidd; Kenneth K Kidd; Andre Langaney; Alice A Lin; S Qasim Mehdi; Peter Parham; Alberto Piazza; Maria Pia Pistillo; Yaping Qian; Qunfang Shu; Jiujin Xu; S Zhu; James L Weber; Henry T Greely; Marcus W Feldman; Gilles Thomas; Jean Dausset; L Luca Cavalli-Sforza
Journal:  Science       Date:  2002-04-12       Impact factor: 47.728

3.  Inferring ethnic origin by means of an STR profile.

Authors:  A L Lowe; A Urquhart; L A Foreman; I W Evett
Journal:  Forensic Sci Int       Date:  2001-06-01       Impact factor: 2.395

4.  Genetic structure of human populations.

Authors:  Noah A Rosenberg; Jonathan K Pritchard; James L Weber; Howard M Cann; Kenneth K Kidd; Lev A Zhivotovsky; Marcus W Feldman
Journal:  Science       Date:  2002-12-20       Impact factor: 47.728

5.  The EDNAP mitochondrial DNA population database (EMPOP) collaborative exercises: organisation, results and perspectives.

Authors:  Walther Parson; Anita Brandstätter; Antonio Alonso; Nathalie Brandt; Bernd Brinkmann; Angel Carracedo; Daniel Corach; Olivier Froment; Ivana Furac; Tomasz Grzybowski; Karin Hedberg; Christine Keyser-Tracqui; Tomasz Kupiec; Sabine Lutz-Bonengel; Bente Mevag; Rafal Ploski; Hermann Schmitter; Peter Schneider; Denise Syndercombe-Court; Eric Sørensen; Heather Thew; Gillian Tully; Richard Scheithauer
Journal:  Forensic Sci Int       Date:  2004-01-28       Impact factor: 2.395

6.  Introduction of an single nucleodite polymorphism-based "Major Y-chromosome haplogroup typing kit" suitable for predicting the geographical origin of male lineages.

Authors:  María Brión; Juan J Sanchez; Kinga Balogh; Catherine Thacker; Alejandro Blanco-Verea; Claus Børsting; Beate Stradmann-Bellinghausen; Magdalena Bogus; Denise Syndercombe-Court; Peter M Schneider; Angel Carracedo; Niels Morling
Journal:  Electrophoresis       Date:  2005-12       Impact factor: 3.535

7.  A haplotype map of the human genome.

Authors: 
Journal:  Nature       Date:  2005-10-27       Impact factor: 49.962

8.  The International HapMap Project Web site.

Authors:  Gudmundur A Thorisson; Albert V Smith; Lalitha Krishnan; Lincoln D Stein
Journal:  Genome Res       Date:  2005-11       Impact factor: 9.043

9.  A multiplex assay with 52 single nucleotide polymorphisms for human identification.

Authors:  Juan J Sanchez; Chris Phillips; Claus Børsting; Kinga Balogh; Magdalena Bogus; Manuel Fondevila; Cheryl D Harrison; Esther Musgrave-Brown; Antonio Salas; Denise Syndercombe-Court; Peter M Schneider; Angel Carracedo; Niels Morling
Journal:  Electrophoresis       Date:  2006-05       Impact factor: 3.535

10.  Inferring ancestral origin using a single multiplex assay of ancestry-informative marker SNPs.

Authors:  C Phillips; A Salas; J J Sánchez; M Fondevila; A Gómez-Tato; J Alvarez-Dios; M Calaza; M Casares de Cal; D Ballard; M V Lareu; A Carracedo
Journal:  Forensic Sci Int Genet       Date:  2007-08-22       Impact factor: 4.882

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  15 in total

1.  Subtyping of Y-chromosomal haplogroup E-M78 (E1b1b1a) by SNP assay and its forensic application.

Authors:  S Caratti; S Gino; C Torre; C Robino
Journal:  Int J Legal Med       Date:  2009-05-09       Impact factor: 2.686

2.  Haplotype block: a new type of forensic DNA markers.

Authors:  Jianye Ge; Bruce Budowle; John V Planz; Ranajit Chakraborty
Journal:  Int J Legal Med       Date:  2009-12-22       Impact factor: 2.686

3.  SNPSTR rs59186128_D7S820 polymorphism distribution in European Caucasoid, Hispanic, and Afro-American populations.

Authors:  A Odriozola; J M Aznar; L Valverde; S Cardoso; M L Bravo; J J Builes; B Martínez; D Sanchez; F González-Andrade; E Sarasola; M C González-Fernández; B Martínez Jarreta; Marian M De Pancorbo
Journal:  Int J Legal Med       Date:  2009-08-21       Impact factor: 2.686

4.  Development of SNP-based human identification system.

Authors:  Jae-Jung Kim; Bok-Ghee Han; Hae-In Lee; Han-Wook Yoo; Jong-Keuk Lee
Journal:  Int J Legal Med       Date:  2010-03       Impact factor: 2.686

5.  Selection of 29 highly informative InDel markers for human identification and paternity analysis in Chinese Han population by the SNPlex genotyping system.

Authors:  Chengtao Li; Suhua Zhang; Li Li; Jingzhong Chen; Yan Liu; Shumin Zhao
Journal:  Mol Biol Rep       Date:  2011-06-18       Impact factor: 2.316

6.  Prediction of people's origin from degraded DNA--presentation of SNP assays and calculation of probability.

Authors:  Micaela Poetsch; Rowena Blöhm; Melanie Harder; Hiromasa Inoue; Nicole von Wurmb-Schwark; Sandra Freitag-Wolf
Journal:  Int J Legal Med       Date:  2012-08-24       Impact factor: 2.686

7.  Kinship Analysis with Diallelic SNPs - Experiences with the SNPforID Multiplex in an ISO17025 Accreditated Laboratory.

Authors:  Claus Børsting; Martin Mikkelsen; Niels Morling
Journal:  Transfus Med Hemother       Date:  2012-05-12       Impact factor: 3.747

8.  SNPs as Supplements in Simple Kinship Analysis or as Core Markers in Distant Pairwise Relationship Tests: When Do SNPs Add Value or Replace Well-Established and Powerful STR Tests?

Authors:  Christopher Phillips; Manuel García-Magariños; Antonio Salas; Angel Carracedo; Maria Victoria Lareu
Journal:  Transfus Med Hemother       Date:  2012-05-12       Impact factor: 3.747

9.  Beyond STRs: The Role of Diallelic Markers in Forensic Genetics.

Authors:  Peter M Schneider
Journal:  Transfus Med Hemother       Date:  2012-05-15       Impact factor: 3.747

10.  Ancestry informative markers for distinguishing between Thai populations based on genome-wide association datasets.

Authors:  Kornkiat Vongpaisarnsin; Jennifer Beth Listman; Robert T Malison; Joel Gelernter
Journal:  Leg Med (Tokyo)       Date:  2015-02-25       Impact factor: 1.376

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