Literature DB >> 11125125

STRBase: a short tandem repeat DNA database for the human identity testing community.

C M Ruitberg1, D J Reeder, J M Butler.   

Abstract

The National Institute of Standards and Technology (NIST) has compiled and maintained a Short Tandem Repeat DNA Internet Database (http://www.cstl.nist.gov/biotech/++ +strbase/) since 1997 commonly referred to as STRBase. This database is an information resource for the forensic DNA typing community with details on commonly used short tandem repeat (STR) DNA markers. STRBase consolidates and organizes the abundant literature on this subject to facilitate on-going efforts in DNA typing. Observed alleles and annotated sequence for each STR locus are described along with a review of STR analysis technologies. Additionally, commercially available STR multiplex kits are described, published polymerase chain reaction (PCR) primer sequences are reported, and validation studies conducted by a number of forensic laboratories are listed. To supplement the technical information, addresses for scientists and hyperlinks to organizations working in this area are available, along with the comprehensive reference list of over 1300 publications on STRs used for DNA typing purposes.

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Year:  2001        PMID: 11125125      PMCID: PMC29767          DOI: 10.1093/nar/29.1.320

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  4 in total

Review 1.  Impact of DNA typing on standards and practice in the forensic community.

Authors:  D J Reeder
Journal:  Arch Pathol Lab Med       Date:  1999-11       Impact factor: 5.534

2.  Legal protests prompt DNA primer release.

Authors:  P Smaglik
Journal:  Nature       Date:  2000-07-27       Impact factor: 49.962

3.  The validation of a 7-locus multiplex STR test for use in forensic casework. (I). Mixtures, ageing, degradation and species studies.

Authors:  R Sparkes; C Kimpton; S Watson; N Oldroyd; T Clayton; L Barnett; J Arnold; C Thompson; R Hale; J Chapman; A Urquhart; P Gill
Journal:  Int J Legal Med       Date:  1996       Impact factor: 2.686

4.  DNA typing and genetic mapping with trimeric and tetrameric tandem repeats.

Authors:  A Edwards; A Civitello; H A Hammond; C T Caskey
Journal:  Am J Hum Genet       Date:  1991-10       Impact factor: 11.025

  4 in total
  58 in total

Review 1.  NIST physical standards for DNA-based medical testing.

Authors:  Peter E Barker; Michael S Watson; John R Ticehurst; Jennifer C Colbert; Catherine D O'Connell
Journal:  J Clin Lab Anal       Date:  2002       Impact factor: 2.352

2.  FREP: a database of functional repeats in mouse cDNAs.

Authors:  Takeshi Nagashima; Hideo Matsuda; Diego G Silva; Nikolai Petrovsky; Akihiko Konagaya; Christian Schönbach; Takeya Kasukawa; Takahiro Arakawa; Piero Carninci; Jun Kawai; Yoshihide Hayashizaki
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

3.  Variation at 16 STR loci in Rwandans (Hutu) and implications on profile frequency estimation in Bantu-speakers.

Authors:  Sergio Tofanelli; Ilaria Boschi; Stefania Bertoneri; Valentina Coia; Luca Taglioli; Marcello Giovanni Franceschi; Giovanni Destro-Bisol; Vincenzo Pascali; Giorgio Paoli
Journal:  Int J Legal Med       Date:  2003-02-15       Impact factor: 2.686

4.  Variant alleles, triallelic patterns, and point mutations observed in nuclear short tandem repeat typing of populations in Bosnia and Serbia.

Authors:  René L M Huel; Lara Basić; Kamelija Madacki-Todorović; Lejla Smajlović; Izet Eminović; Irfan Berbić; Ana Milos; Thomas J Parsons
Journal:  Croat Med J       Date:  2007-08       Impact factor: 1.351

5.  The SNPforID browser: an online tool for query and display of frequency data from the SNPforID project.

Authors:  Jorge Amigo; Christopher Phillips; Maviky Lareu; Angel Carracedo
Journal:  Int J Legal Med       Date:  2008-05-20       Impact factor: 2.686

6.  Development and validation for identity testing of I-DNADuo, a combination of I-DNA1 and a new multiplex system, I-DNA2.

Authors:  Adrian Odriozola; Jose María Aznar; David Celorrio; Maria Luisa Bravo; Juan Jose Builes; Marian Martinez de Pancorbo
Journal:  Int J Legal Med       Date:  2011-06-09       Impact factor: 2.686

7.  Development and validation of I-DNA1: a 15-Loci multiplex system for identity testing.

Authors:  A Odriozola; J M Aznar; D Celorrio; M L Bravo; J J Builes; J F Val-Bernal; Marian M de Pancorbo
Journal:  Int J Legal Med       Date:  2011-01-22       Impact factor: 2.686

8.  Informativeness of minisatellite and microsatellite markers for genetic analysis in papaya.

Authors:  G A F Oliveira; J L L Dantas; E J Oliveira
Journal:  Genetica       Date:  2015-08-18       Impact factor: 1.082

9.  TRedD--a database for tandem repeats over the edit distance.

Authors:  Dina Sokol; Firat Atagun
Journal:  Database (Oxford)       Date:  2010-07-06       Impact factor: 3.451

10.  DNA identification by pedigree likelihood ratio accommodating population substructure and mutations.

Authors:  Jianye Ge; Bruce Budowle; Ranajit Chakraborty
Journal:  Investig Genet       Date:  2010-10-04
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