Literature DB >> 19921517

Development of SNP-based human identification system.

Jae-Jung Kim1, Bok-Ghee Han, Hae-In Lee, Han-Wook Yoo, Jong-Keuk Lee.   

Abstract

Single nucleotide polymorphisms (SNPs) appeal to the forensic DNA community because of their abundance in the human genome, low mutation rate, small amplicon size, and feasibility of high-throughput genotyping technologies.In an initial screening, we identified six SNP markers of sex determination by resequencing the amelogenin genes and the zinc finger protein genes located on the sex chromosomes. Furthermore, for use in human identification,we selected 30 highly polymorphic autosomal SNP markers from among a human population and examined the potential utility of these SNP markers for human identification.The combined mean match probability of 30 SNP markers was 4.83 x 10(-13). Using genotyping data from 8,842 unrelated Korean individuals, we also found that discrimination power increased 10-fold for the addition of every five SNP markers in human identification. In this study, we demonstrated that SNP markers are very useful for sex determination and human identification, even in a very homogeneous population.

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Year:  2010        PMID: 19921517     DOI: 10.1007/s00414-009-0389-9

Source DB:  PubMed          Journal:  Int J Legal Med        ISSN: 0937-9827            Impact factor:   2.686


  26 in total

1.  Utility of gender determination in cell line identity.

Authors:  A S Durkin; E Cedrone; G Sykes; D Boles; Y A Reid
Journal:  In Vitro Cell Dev Biol Anim       Date:  2000-06       Impact factor: 2.416

2.  Selection of twenty-four highly informative SNP markers for human identification and paternity analysis in Koreans.

Authors:  Hwan Young Lee; Myung Jin Park; Ji-Eun Yoo; Ukhee Chung; Gil-Ro Han; Kyoung-Jin Shin
Journal:  Forensic Sci Int       Date:  2005-03-10       Impact factor: 2.395

Review 3.  SNPs in forensic genetics: a review on SNP typing methodologies.

Authors:  Beatriz Sobrino; María Brión; Angel Carracedo
Journal:  Forensic Sci Int       Date:  2005-01-11       Impact factor: 2.395

4.  Developing a SNP panel for forensic identification of individuals.

Authors:  Kenneth K Kidd; Andrew J Pakstis; William C Speed; Elena L Grigorenko; Sylvester L B Kajuna; Nganyirwa J Karoma; Selemani Kungulilo; Jong-Jin Kim; Ru-Band Lu; Adekunle Odunsi; Friday Okonofua; Josef Parnas; Leslie O Schulz; Olga V Zhukova; Judith R Kidd
Journal:  Forensic Sci Int       Date:  2005-12-19       Impact factor: 2.395

5.  A multiplex assay with 52 single nucleotide polymorphisms for human identification.

Authors:  Juan J Sanchez; Chris Phillips; Claus Børsting; Kinga Balogh; Magdalena Bogus; Manuel Fondevila; Cheryl D Harrison; Esther Musgrave-Brown; Antonio Salas; Denise Syndercombe-Court; Peter M Schneider; Angel Carracedo; Niels Morling
Journal:  Electrophoresis       Date:  2006-05       Impact factor: 3.535

Review 6.  Illumina universal bead arrays.

Authors:  Jian-Bing Fan; Kevin L Gunderson; Marina Bibikova; Joanne M Yeakley; Jing Chen; Eliza Wickham Garcia; Lori L Lebruska; Marc Laurent; Richard Shen; David Barker
Journal:  Methods Enzymol       Date:  2006       Impact factor: 1.600

7.  Candidate SNPs for a universal individual identification panel.

Authors:  Andrew J Pakstis; William C Speed; Judith R Kidd; Kenneth K Kidd
Journal:  Hum Genet       Date:  2007-02-27       Impact factor: 4.132

8.  Variation in short tandem repeat sequences--a survey of twelve microsatellite loci for use as forensic identification markers.

Authors:  A Urquhart; C P Kimpton; T J Downes; P Gill
Journal:  Int J Legal Med       Date:  1994       Impact factor: 2.686

9.  Preimplantation prevention of X-linked disease: reliable and rapid sex determination of single human cells by restriction analysis of simultaneously amplified ZFX and ZFY sequences.

Authors:  S S Chong; K Kristjansson; J Cota; A H Handyside; M R Hughes
Journal:  Hum Mol Genet       Date:  1993-08       Impact factor: 6.150

10.  SNP panel identification assay (SPIA): a genetic-based assay for the identification of cell lines.

Authors:  Francesca Demichelis; Heidi Greulich; Jill A Macoska; Rameen Beroukhim; William R Sellers; Levi Garraway; Mark A Rubin
Journal:  Nucleic Acids Res       Date:  2008-02-27       Impact factor: 16.971

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  12 in total

1.  Superimposition technique for skull identification with Afloat® software.

Authors:  Christoph G Birngruber; Kerstin Kreutz; Frank Ramsthaler; Jonathan Krähahn; Marcel A Verhoff
Journal:  Int J Legal Med       Date:  2010-07-22       Impact factor: 2.686

2.  Genotyping of 75 SNPs using arrays for individual identification in five population groups.

Authors:  Hsiao-Lin Hwa; Lawrence Shih Hsin Wu; Chun-Yen Lin; Tsun-Ying Huang; Hsiang-I Yin; Li-Hui Tseng; James Chun-I Lee
Journal:  Int J Legal Med       Date:  2015-08-22       Impact factor: 2.686

3.  How many single nucleotide polymorphisms (SNPs) are needed to replace short tandem repeats (STRs) in forensic applications?

Authors:  Hyo-Jung Lee; Jae Won Lee; Su Jin Jeong; Mira Park
Journal:  Int J Legal Med       Date:  2017-02-27       Impact factor: 2.686

4.  Evaluating information content of SNPs for sample-tagging in re-sequencing projects.

Authors:  Hao Hu; Xiang Liu; Wenfei Jin; H Hilger Ropers; Thomas F Wienker
Journal:  Sci Rep       Date:  2015-05-15       Impact factor: 4.379

5.  A SNP panel and online tool for checking genotype concordance through comparing QR codes.

Authors:  Yonghong Du; Joshua S Martin; John McGee; Yuchen Yang; Eric Yi Liu; Yingrui Sun; Matthias Geihs; Xuejun Kong; Eric Lingfeng Zhou; Yun Li; Jie Huang
Journal:  PLoS One       Date:  2017-09-19       Impact factor: 3.240

6.  Evaluation of Digital PCR as a Technique for Monitoring Acute Rejection in Kidney Transplantation.

Authors:  Hyeseon Lee; Young-Mi Park; Yu-Mee We; Duck Jong Han; Jung-Woo Seo; Haena Moon; Yu-Ho Lee; Yang-Gyun Kim; Ju-Young Moon; Sang-Ho Lee; Jong-Keuk Lee
Journal:  Genomics Inform       Date:  2017-03-29

7.  SNPflow: a lightweight application for the processing, storing and automatic quality checking of genotyping assays.

Authors:  Hansi Weissensteiner; Margot Haun; Sebastian Schönherr; Mathias Neuner; Lukas Forer; Günther Specht; Anita Kloss-Brandstätter; Florian Kronenberg; Stefan Coassin
Journal:  PLoS One       Date:  2013-03-19       Impact factor: 3.240

8.  Demonstration of Protein-Based Human Identification Using the Hair Shaft Proteome.

Authors:  Glendon J Parker; Tami Leppert; Deon S Anex; Jonathan K Hilmer; Nori Matsunami; Lisa Baird; Jeffery Stevens; Krishna Parsawar; Blythe P Durbin-Johnson; David M Rocke; Chad Nelson; Daniel J Fairbanks; Andrew S Wilson; Robert H Rice; Scott R Woodward; Brian Bothner; Bradley R Hart; Mark Leppert
Journal:  PLoS One       Date:  2016-09-07       Impact factor: 3.240

9.  A SNP panel for identification of DNA and RNA specimens.

Authors:  Soheil Yousefi; Tooba Abbassi-Daloii; Thirsa Kraaijenbrink; Martijn Vermaat; Hailiang Mei; Peter van 't Hof; Maarten van Iterson; Daria V Zhernakova; Annique Claringbould; Lude Franke; Leen M 't Hart; Roderick C Slieker; Amber van der Heijden; Peter de Knijff; Peter A C 't Hoen
Journal:  BMC Genomics       Date:  2018-01-25       Impact factor: 3.969

Review 10.  Trends in plant research using molecular markers.

Authors:  Jose Antonio Garrido-Cardenas; Concepción Mesa-Valle; Francisco Manzano-Agugliaro
Journal:  Planta       Date:  2017-12-14       Impact factor: 4.116

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