Literature DB >> 18487305

A closed-form analytic expression for FRAP formula for the binding diffusion model.

Minchul Kang, Anne K Kenworthy.   

Abstract

One of the most dominant methods cells use for a large class of cellular processes is reaction (or binding) diffusion kinetics, which are controlled by kinetic constants such as diffusion coefficients and on/off binding rate constants. Fluorescence recovery after photobleaching (FRAP) can be used to determine these kinetic constants in living cells. While an analytic expression for FRAP formulae for pure diffusion has been available for some time, an analytic FRAP formula for the binding diffusion model has not been reported yet. Here, we present an analytic FRAP formula for the binding diffusion model in an explicit form allowing for diffusion of the bound complex for either a uniform circle laser profile or a Gaussian laser profile.

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Year:  2008        PMID: 18487305      PMCID: PMC2440465          DOI: 10.1529/biophysj.108.135913

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  8 in total

Review 1.  Using FRAP and mathematical modeling to determine the in vivo kinetics of nuclear proteins.

Authors:  Gustavo Carrero; Darin McDonald; Ellen Crawford; Gerda de Vries; Michael J Hendzel
Journal:  Methods       Date:  2003-01       Impact factor: 3.608

2.  Analysis of binding reactions by fluorescence recovery after photobleaching.

Authors:  Brian L Sprague; Robert L Pego; Diana A Stavreva; James G McNally
Journal:  Biophys J       Date:  2004-06       Impact factor: 4.033

3.  From protein dynamics to animal behavior: new insights into complex cell regulatory mechanisms.

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Journal:  Curr Opin Cell Biol       Date:  2004-04       Impact factor: 8.382

4.  The DNA binding activity of p53 displays reaction-diffusion kinetics.

Authors:  Peter Hinow; Carl E Rogers; Christopher E Barbieri; Jennifer A Pietenpol; Anne K Kenworthy; Emmanuele DiBenedetto
Journal:  Biophys J       Date:  2006-04-07       Impact factor: 4.033

5.  Mobility measurement by analysis of fluorescence photobleaching recovery kinetics.

Authors:  D Axelrod; D E Koppel; J Schlessinger; E Elson; W W Webb
Journal:  Biophys J       Date:  1976-09       Impact factor: 4.033

6.  Theoretical analysis of fluorescence photobleaching recovery experiments.

Authors:  D M Soumpasis
Journal:  Biophys J       Date:  1983-01       Impact factor: 4.033

Review 7.  The membrane and lipids as integral participants in signal transduction: lipid signal transduction for the non-lipid biochemist.

Authors:  Kathleen M Eyster
Journal:  Adv Physiol Educ       Date:  2007-03       Impact factor: 2.288

8.  Depalmitoylated Ras traffics to and from the Golgi complex via a nonvesicular pathway.

Authors:  J Shawn Goodwin; Kimberly R Drake; Carl Rogers; Latasha Wright; Jennifer Lippincott-Schwartz; Mark R Philips; Anne K Kenworthy
Journal:  J Cell Biol       Date:  2005-07-18       Impact factor: 10.539

  8 in total
  17 in total

1.  A quantitative approach to analyze binding diffusion kinetics by confocal FRAP.

Authors:  Minchul Kang; Charles A Day; Emmanuele DiBenedetto; Anne K Kenworthy
Journal:  Biophys J       Date:  2010-11-03       Impact factor: 4.033

2.  Nuclear proteins: finding and binding target sites in chromatin.

Authors:  Martin E van Royen; Angelika Zotter; Shehu M Ibrahim; Bart Geverts; Adriaan B Houtsmuller
Journal:  Chromosome Res       Date:  2011-01       Impact factor: 5.239

3.  Nuclear LC3 Associates with Slowly Diffusing Complexes that Survey the Nucleolus.

Authors:  Lewis J Kraft; Pallavi Manral; Jacob Dowler; Anne K Kenworthy
Journal:  Traffic       Date:  2016-02-18       Impact factor: 6.215

Review 4.  Molecular diffusion and binding analyzed with FRAP.

Authors:  Malte Wachsmuth
Journal:  Protoplasma       Date:  2014-01-04       Impact factor: 3.356

5.  A generalization of theory for two-dimensional fluorescence recovery after photobleaching applicable to confocal laser scanning microscopes.

Authors:  Minchul Kang; Charles A Day; Kimberly Drake; Anne K Kenworthy; Emmanuele DiBenedetto
Journal:  Biophys J       Date:  2009-09-02       Impact factor: 4.033

6.  A nonfitting method using a spatial sine window transform for inhomogeneous effective-diffusion measurements by FRAP.

Authors:  Darya Y Orlova; Eva Bártová; Valeri P Maltsev; Stanislav Kozubek; Andrei V Chernyshev
Journal:  Biophys J       Date:  2011-01-19       Impact factor: 4.033

7.  Modeling capping protein FRAP and CALI experiments reveals in vivo regulation of actin dynamics.

Authors:  Maryna Kapustina; Eric Vitriol; Timothy C Elston; Leslie M Loew; Ken Jacobson
Journal:  Cytoskeleton (Hoboken)       Date:  2010-08

8.  Simultaneous measurement of anisotropic solute diffusivity and binding reaction rates in biological tissues by FRAP.

Authors:  Francesco Travascio; Wei Yong Gu
Journal:  Ann Biomed Eng       Date:  2010-08-05       Impact factor: 3.934

9.  Monitoring dynamic binding of chromatin proteins in vivo by fluorescence recovery after photobleaching.

Authors:  Florian Mueller; Tatiana S Karpova; Davide Mazza; James G McNally
Journal:  Methods Mol Biol       Date:  2012

10.  Analysis of protein and lipid dynamics using confocal fluorescence recovery after photobleaching (FRAP).

Authors:  Charles A Day; Lewis J Kraft; Minchul Kang; Anne K Kenworthy
Journal:  Curr Protoc Cytom       Date:  2012-10
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