Literature DB >> 18487303

Oscillator model reduction preserving the phase response: application to the circadian clock.

Stephanie R Taylor1, Francis J Doyle, Linda R Petzold.   

Abstract

Mathematical model reduction is a long-standing technique used both to gain insight into model subprocesses and to reduce the computational costs of simulation and analysis. A reduced model must retain essential features of the full model, which, traditionally, have been the trajectories of certain state variables. For biological clocks, timing, or phase, characteristics must be preserved. A key performance criterion for a clock is the ability to adjust its phase correctly in response to external signals. We present a novel model reduction technique that removes components from a single-oscillator clock model and discover that four feedback loops are redundant with respect to its phase response behavior. Using a coupled multioscillator model of a circadian clock, we demonstrate that by preserving the phase response behavior of a single oscillator, we preserve timing behavior at the multioscillator level.

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Year:  2008        PMID: 18487303      PMCID: PMC2483761          DOI: 10.1529/biophysj.107.128678

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


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