Literature DB >> 17052126

Reduction of mathematical models of signal transduction networks: simulation-based approach applied to EGF receptor signalling.

H Conzelmann1, J Saez-Rodriguez, T Sauter, E Bullinger, F Allgöwer, E D Gilles.   

Abstract

Biological systems and, in particular, cellular signal transduction pathways are characterised by their high complexity. Mathematical models describing these processes might be of great help to gain qualitative and, most importantly, quantitative knowledge about such complex systems. However, a detailed mathematical description of these systems leads to nearly unmanageably large models, especially when combining models of different signalling pathways to study cross-talk phenomena. Therefore, simplification of models becomes very important. Different methods are available for model reduction of biological models. Importantly, most of the common model reduction methods cannot be applied to cellular signal transduction pathways. Using as an example the epidermal growth factor (EGF) signalling pathway, we discuss how quantitative methods like system analysis and simulation studies can help to suitably reduce models and additionally give new insights into the signal transmission and processing of the cell.

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Year:  2004        PMID: 17052126     DOI: 10.1049/sb:20045011

Source DB:  PubMed          Journal:  Syst Biol (Stevenage)        ISSN: 1741-2471


  22 in total

Review 1.  Computational modelling of the receptor-tyrosine-kinase-activated MAPK pathway.

Authors:  Richard J Orton; Oliver E Sturm; Vladislav Vyshemirsky; Muffy Calder; David R Gilbert; Walter Kolch
Journal:  Biochem J       Date:  2005-12-01       Impact factor: 3.857

2.  A top-down approach to mechanistic biological modeling: application to the single-chain antibody folding pathway.

Authors:  Scott Hildebrandt; David Raden; Linda Petzold; Anne Skaja Robinson; Francis J Doyle
Journal:  Biophys J       Date:  2008-07-18       Impact factor: 4.033

3.  Oscillator model reduction preserving the phase response: application to the circadian clock.

Authors:  Stephanie R Taylor; Francis J Doyle; Linda R Petzold
Journal:  Biophys J       Date:  2008-05-16       Impact factor: 4.033

4.  A review of computational and mathematical modeling contributions to our understanding of Mycobacterium tuberculosis within-host infection and treatment.

Authors:  Denise Kirschner; Elsje Pienaar; Simeone Marino; Jennifer J Linderman
Journal:  Curr Opin Syst Biol       Date:  2017-05-22

5.  Reduced-order modelling of biochemical networks: application to the GTPase-cycle signalling module.

Authors:  M R Maurya; S J Bornheimer; V Venkatasubramanian; S Subramaniam
Journal:  Syst Biol (Stevenage)       Date:  2005-12

6.  Robust simplifications of multiscale biochemical networks.

Authors:  Ovidiu Radulescu; Alexander N Gorban; Andrei Zinovyev; Alain Lilienbaum
Journal:  BMC Syst Biol       Date:  2008-10-14

7.  Zooming of states and parameters using a lumping approach including back-translation.

Authors:  Mikael Sunnåker; Henning Schmidt; Mats Jirstrand; Gunnar Cedersund
Journal:  BMC Syst Biol       Date:  2010-03-18

8.  System theoretical investigation of human epidermal growth factor receptor-mediated signalling.

Authors:  Y Zhang; H Shankaran; L Opresko; H Resat
Journal:  IET Syst Biol       Date:  2008-09       Impact factor: 1.615

9.  Model reduction by manifold boundaries.

Authors:  Mark K Transtrum; Peng Qiu
Journal:  Phys Rev Lett       Date:  2014-08-29       Impact factor: 9.161

10.  From pathway to population--a multiscale model of juxtacrine EGFR-MAPK signalling.

Authors:  D C Walker; N T Georgopoulos; J Southgate
Journal:  BMC Syst Biol       Date:  2008-11-26
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