Literature DB >> 18487092

HCLS 2.0/3.0: health care and life sciences data mashup using Web 2.0/3.0.

Kei-Hoi Cheung1, Kevin Y Yip, Jeffrey P Townsend, Matthew Scotch.   

Abstract

We describe the potential of current Web 2.0 technologies to achieve data mashup in the health care and life sciences (HCLS) domains, and compare that potential to the nascent trend of performing semantic mashup. After providing an overview of Web 2.0, we demonstrate two scenarios of data mashup, facilitated by the following Web 2.0 tools and sites: Yahoo! Pipes, Dapper, Google Maps and GeoCommons. In the first scenario, we exploited Dapper and Yahoo! Pipes to implement a challenging data integration task in the context of DNA microarray research. In the second scenario, we exploited Yahoo! Pipes, Google Maps, and GeoCommons to create a geographic information system (GIS) interface that allows visualization and integration of diverse categories of public health data, including cancer incidence and pollution prevalence data. Based on these two scenarios, we discuss the strengths and weaknesses of these Web 2.0 mashup technologies. We then describe Semantic Web, the mainstream Web 3.0 technology that enables more powerful data integration over the Web. We discuss the areas of intersection of Web 2.0 and Semantic Web, and describe the potential benefits that can be brought to HCLS research by combining these two sets of technologies.

Entities:  

Mesh:

Year:  2008        PMID: 18487092      PMCID: PMC2933816          DOI: 10.1016/j.jbi.2008.04.001

Source DB:  PubMed          Journal:  J Biomed Inform        ISSN: 1532-0464            Impact factor:   6.317


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Journal:  Bioinformatics       Date:  2005-06       Impact factor: 6.937

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Review 7.  Orchestrating the Human Genome Project.

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8.  ArrayExpress--a public repository for microarray gene expression data at the EBI.

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Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

9.  BioWarehouse: a bioinformatics database warehouse toolkit.

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Review 10.  Advancing translational research with the Semantic Web.

Authors:  Alan Ruttenberg; Tim Clark; William Bug; Matthias Samwald; Olivier Bodenreider; Helen Chen; Donald Doherty; Kerstin Forsberg; Yong Gao; Vipul Kashyap; June Kinoshita; Joanne Luciano; M Scott Marshall; Chimezie Ogbuji; Jonathan Rees; Susie Stephens; Gwendolyn T Wong; Elizabeth Wu; Davide Zaccagnini; Tonya Hongsermeier; Eric Neumann; Ivan Herman; Kei-Hoi Cheung
Journal:  BMC Bioinformatics       Date:  2007-05-09       Impact factor: 3.169

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Review 3.  Translational informatics: enabling high-throughput research paradigms.

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7.  Injury surveillance in low-resource settings using Geospatial and Social Web technologies.

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8.  Semantic mashup of biomedical data.

Authors:  Kei-Hoi Cheung; Vipul Kashyap; Joanne S Luciano; Huajun Chen; Yimin Wang; Susie Stephens
Journal:  J Biomed Inform       Date:  2008-08-12       Impact factor: 6.317

9.  Development of grid-like applications for public health using Web 2.0 mashup techniques.

Authors:  Matthew Scotch; Kevin Y Yip; Kei-Hoi Cheung
Journal:  J Am Med Inform Assoc       Date:  2008-08-28       Impact factor: 4.497

10.  Chapter 1: Biomedical knowledge integration.

Authors:  Philip R O Payne
Journal:  PLoS Comput Biol       Date:  2012-12-27       Impact factor: 4.475

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