Literature DB >> 12855473

myGrid: personalised bioinformatics on the information grid.

Robert D Stevens1, Alan J Robinson, Carole A Goble.   

Abstract

MOTIVATION: The (my)Grid project aims to exploit Grid technology, with an emphasis on the Information Grid, and provide middleware layers that make it appropriate for the needs of bioinformatics. (my)Grid is building high level services for data and application integration such as resource discovery, workflow enactment and distributed query processing. Additional services are provided to support the scientific method and best practice found at the bench but often neglected at the workstation, notably provenance management, change notification and personalisation.
RESULTS: We give an overview of these services and their metadata. In particular, semantically rich metadata expressed using ontologies necessary to discover, select and compose services into dynamic workflows.

Mesh:

Year:  2003        PMID: 12855473     DOI: 10.1093/bioinformatics/btg1041

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  32 in total

1.  BOD: a customizable bioinformatics on demand system accommodating multiple steps and parallel tasks.

Authors:  Li-An Qiao; Jing Zhu; Qingyan Liu; Tao Zhu; Chi Song; Wei Lin; Guozhu Wei; Lisen Mu; Jiang Tao; Nanming Zhao; Guangwen Yang; Xiangjun Liu
Journal:  Nucleic Acids Res       Date:  2004-08-09       Impact factor: 16.971

2.  geWorkbench: an open source platform for integrative genomics.

Authors:  Aris Floratos; Kenneth Smith; Zhou Ji; John Watkinson; Andrea Califano
Journal:  Bioinformatics       Date:  2010-05-28       Impact factor: 6.937

3.  caGrid 1.0: an enterprise Grid infrastructure for biomedical research.

Authors:  Scott Oster; Stephen Langella; Shannon Hastings; David Ervin; Ravi Madduri; Joshua Phillips; Tahsin Kurc; Frank Siebenlist; Peter Covitz; Krishnakant Shanbhag; Ian Foster; Joel Saltz
Journal:  J Am Med Inform Assoc       Date:  2007-12-20       Impact factor: 4.497

Review 4.  Accessing and integrating data and knowledge for biomedical research.

Authors:  A Burgun; O Bodenreider
Journal:  Yearb Med Inform       Date:  2008

5.  Bringing Web 2.0 to bioinformatics.

Authors:  Zhang Zhang; Kei-Hoi Cheung; Jeffrey P Townsend
Journal:  Brief Bioinform       Date:  2008-10-08       Impact factor: 11.622

6.  HCLS 2.0/3.0: health care and life sciences data mashup using Web 2.0/3.0.

Authors:  Kei-Hoi Cheung; Kevin Y Yip; Jeffrey P Townsend; Matthew Scotch
Journal:  J Biomed Inform       Date:  2008-04-11       Impact factor: 6.317

7.  BIRI: a new approach for automatically discovering and indexing available public bioinformatics resources from the literature.

Authors:  Guillermo de la Calle; Miguel García-Remesal; Stefano Chiesa; Diana de la Iglesia; Victor Maojo
Journal:  BMC Bioinformatics       Date:  2009-10-07       Impact factor: 3.169

8.  e-Science, caGrid, and Translational Biomedical Research.

Authors:  Joel Saltz; Tahsin Kurc; Shannon Hastings; Stephen Langella; Scott Oster; David Ervin; Ashish Sharma; Tony Pan; Metin Gurcan; Justin Permar; Renato Ferreira; Philip Payne; Umit Catalyurek; Enrico Caserta; Gustavo Leone; Michael C Ostrowski; Ravi Madduri; Ian Foster; Subhashree Madhavan; Kenneth H Buetow; Krishnakant Shanbhag; Eliot Siegel
Journal:  Computer (Long Beach Calif)       Date:  2008-11       Impact factor: 2.683

9.  Molgenis-impute: imputation pipeline in a box.

Authors:  Alexandros Kanterakis; Patrick Deelen; Freerk van Dijk; Heorhiy Byelas; Martijn Dijkstra; Morris A Swertz
Journal:  BMC Res Notes       Date:  2015-08-19

10.  XML-based approaches for the integration of heterogeneous bio-molecular data.

Authors:  Marco Mesiti; Ernesto Jiménez-Ruiz; Ismael Sanz; Rafael Berlanga-Llavori; Paolo Perlasca; Giorgio Valentini; David Manset
Journal:  BMC Bioinformatics       Date:  2009-10-15       Impact factor: 3.169

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