Literature DB >> 18479092

Microscale NMR screening of new detergents for membrane protein structural biology.

Qinghai Zhang1, Reto Horst, Michael Geralt, Xingquan Ma, Wen-Xu Hong, M G Finn, Raymond C Stevens, Kurt Wüthrich.   

Abstract

The rate limiting step in biophysical characterization of membrane proteins is often the availability of suitable amounts of protein material. It was therefore of interest to demonstrate that microcoil nuclear magnetic resonance (NMR) technology can be used to screen microscale quantities of membrane proteins for proper folding in samples destined for structural studies. Micoscale NMR was then used to screen a series of newly designed zwitterionic phosphocholine detergents for their ability to reconstitute membrane proteins, using the previously well characterized beta-barrel E. coli outer membrane protein OmpX as a test case. Fold screening was thus achieved with microgram amounts of uniformly (2)H, (15)N-labeld OmpX and affordable amounts of the detergents, and prescreening with SDS-gel electrophoresis ensured efficient selection of the targets for NMR studies. A systematic approach to optimize the phosphocholine motif for membrane protein refolding led to the identification of two new detergents, 138-Fos and 179-Fos, that yield 2D [ (15)N, (1)H]-TROSY correlation NMR spectra of natively folded reconstituted OmpX.

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Year:  2008        PMID: 18479092      PMCID: PMC2586950          DOI: 10.1021/ja077863d

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  53 in total

1.  High-resolution structure of the OmpA membrane domain.

Authors:  A Pautsch; G E Schulz
Journal:  J Mol Biol       Date:  2000-04-28       Impact factor: 5.469

2.  Rigid Amphiphiles for Membrane Protein Manipulation.

Authors: 
Journal:  Angew Chem Int Ed Engl       Date:  2000-02       Impact factor: 15.336

3.  Structure of outer membrane protein A transmembrane domain by NMR spectroscopy.

Authors:  A Arora; F Abildgaard; J H Bushweller; L K Tamm
Journal:  Nat Struct Biol       Date:  2001-04

4.  Biomolecular NMR using a microcoil NMR probe--new technique for the chemical shift assignment of aromatic side chains in proteins.

Authors:  Wolfgang Peti; James Norcross; Gary Eldridge; Mark O'Neil-Johnson
Journal:  J Am Chem Soc       Date:  2004-05-12       Impact factor: 15.419

5.  A simple chemical synthesis of the ether analog of lysophosphatidylcholine and platelet-activating factor.

Authors:  A K Das; A K Hajra
Journal:  J Lipid Res       Date:  1995-11       Impact factor: 5.922

6.  The program XEASY for computer-supported NMR spectral analysis of biological macromolecules.

Authors:  C Bartels; T H Xia; M Billeter; P Güntert; K Wüthrich
Journal:  J Biomol NMR       Date:  1995-07       Impact factor: 2.835

7.  Synthesis and preliminary biochemical assessment of ethyl-terminated perfluoroalkylamine oxide surfactants.

Authors:  Yann Chaudier; Francesca Zito; Philippe Barthélémy; David Stroebel; Bruno Améduri; Jean-Luc Popot; Bernard Pucci
Journal:  Bioorg Med Chem Lett       Date:  2002-06-17       Impact factor: 2.823

8.  NMR study of a membrane protein in detergent-free aqueous solution.

Authors:  Manuela Zoonens; Laurent J Catoire; Fabrice Giusti; Jean-Luc Popot
Journal:  Proc Natl Acad Sci U S A       Date:  2005-06-14       Impact factor: 11.205

9.  Synthesis and use of a lysolecithin analog for the purification of UDP-glucuronosyltransferase.

Authors:  A Dannenberg; T Wong; D Zakim; H Eibl
Journal:  Anal Biochem       Date:  1990-11-15       Impact factor: 3.365

Review 10.  Amphipols: polymeric surfactants for membrane biology research.

Authors:  J-L Popot; E A Berry; D Charvolin; C Creuzenet; C Ebel; D M Engelman; M Flötenmeyer; F Giusti; Y Gohon; Q Hong; J H Lakey; K Leonard; H A Shuman; P Timmins; D E Warschawski; F Zito; M Zoonens; B Pucci; C Tribet
Journal:  Cell Mol Life Sci       Date:  2003-08       Impact factor: 9.261

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  18 in total

1.  Design, synthesis, and properties of branch-chained maltoside detergents for stabilization and crystallization of integral membrane proteins: human connexin 26.

Authors:  Wen-Xu Hong; Kent A Baker; Xingquan Ma; Raymond C Stevens; Mark Yeager; Qinghai Zhang
Journal:  Langmuir       Date:  2010-06-01       Impact factor: 3.882

2.  Recent Advances in the Application of Solution NMR Spectroscopy to Multi-Span Integral Membrane Proteins.

Authors:  Hak Jun Kim; Stanley C Howell; Wade D Van Horn; Young Ho Jeon; Charles R Sanders
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2009-11-01       Impact factor: 9.795

Review 3.  New amphiphiles for membrane protein structural biology.

Authors:  Qinghai Zhang; Houchao Tao; Wen-Xu Hong
Journal:  Methods       Date:  2011-09-20       Impact factor: 3.608

4.  The high-throughput protein sample production platform of the Northeast Structural Genomics Consortium.

Authors:  Rong Xiao; Stephen Anderson; James Aramini; Rachel Belote; William A Buchwald; Colleen Ciccosanti; Ken Conover; John K Everett; Keith Hamilton; Yuanpeng Janet Huang; Haleema Janjua; Mei Jiang; Gregory J Kornhaber; Dong Yup Lee; Jessica Y Locke; Li-Chung Ma; Melissa Maglaqui; Lei Mao; Saheli Mitra; Dayaban Patel; Paolo Rossi; Seema Sahdev; Seema Sharma; Ritu Shastry; G V T Swapna; Saichu N Tong; Dongyan Wang; Huang Wang; Li Zhao; Gaetano T Montelione; Thomas B Acton
Journal:  J Struct Biol       Date:  2010-08-03       Impact factor: 2.867

Review 5.  Solution NMR: A powerful tool for structural and functional studies of membrane proteins in reconstituted environments.

Authors:  Robbins Puthenveetil; Olga Vinogradova
Journal:  J Biol Chem       Date:  2019-09-24       Impact factor: 5.157

6.  Micro-coil NMR to monitor optimization of the reconstitution conditions for the integral membrane protein OmpW in detergent micelles.

Authors:  Pawel Stanczak; Qinghai Zhang; Reto Horst; Pedro Serrano; Kurt Wüthrich
Journal:  J Biomol NMR       Date:  2012-08-14       Impact factor: 2.835

7.  NMR characterization of membrane protein-detergent micelle solutions by use of microcoil equipment.

Authors:  Pawel Stanczak; Reto Horst; Pedro Serrano; Kurt Wüthrich
Journal:  J Am Chem Soc       Date:  2009-12-30       Impact factor: 15.419

8.  Solubilization and characterization of the anthrax toxin pore in detergent micelles.

Authors:  Gregory Vernier; Jie Wang; Laura D Jennings; Jianjun Sun; Audrey Fischer; Likai Song; R John Collier
Journal:  Protein Sci       Date:  2009-09       Impact factor: 6.725

9.  Structural and dynamic properties of juxta-membrane segments of caveolin-1 and caveolin-2 at the membrane interface.

Authors:  Charlotte Le Lan; Jacques Gallay; Michel Vincent; Jean Michel Neumann; Béatrice de Foresta; Nadège Jamin
Journal:  Eur Biophys J       Date:  2009-10-22       Impact factor: 1.733

10.  Production of membrane proteins for NMR studies using the condensed single protein (cSPP) production system.

Authors:  Lili Mao; Yuefeng Tang; S Thangminlal Vaiphei; Tsutomu Shimazu; Sung-Gun Kim; Rajeswari Mani; Elias Fakhoury; Eileen White; Gaetano T Montelione; Masayori Inouye
Journal:  J Struct Funct Genomics       Date:  2009-10-24
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